| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3880 |
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| Symbol | |
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| ID | 3967105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4891463 |
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| End bp | 4894168 |
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| Gene Length | 2706 bp |
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| Protein Length | 901 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637922977 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_529347 |
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| Protein GI | 90023520 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000233231 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0698623 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACATA CAAAGATGCA CGCCAACAAA AATGCACAGC ATGCCAAAAA ATTCGTGCCC
TATTTTGCGC GTACCGGCCT GTTTGCAGCT ATTAGCATGG CCAGCGCCAT GGCTGTTGCA
CAAGACACAC ATTCAGAAAA CAGTAACCCA ATGGAAGAAG TAACGGTTAC TGGCATGCGT
GCCGCGCTAG ATAAAGCGTT GGACGTAAAA CAAAACAGCA ACTTTGTTAT GGATGCTTTG
TCGTTAGAGG ACATTAACTC TACCCCAGCT ATTACCATCG CCGAGGCGTT AGTGCGTATG
CCGGGTGTAT CTGGTGTGCG CGATCGCGGC AACGAAAGCC AAGCGGCCAT TCGCGGCATG
GGCCCGCGCA TGGTGTTCAG TACACTAAAC GGACGTGAGC TTGCCACCTC TGAGCCTGGG
CGCGCAGTGC GCTACGAGCA ATTCCCATCA GAAATGATTT CTGCCGTAGA AGTGTATAAA
TCGCAATCTG CCGATCTTAC CGAAGGCGGT ATTGCCGGTA CTATCAATCT TAAAACCCTG
TCGCCACTTA ATCACAGTGG GCCTACTTAC ACTGTGCGCG CGGGCTTGCA GTACAACGAT
GCCGGTGCAG ATTTGCCAAA CTACGATGCA CTGGGCAATC GTTTTAGCTT ATCTACAGTG
CATAGCATTA CCGACGAATT CGCTATTGCA GTTGGTTACT CTGCGCAAAC GCAAAAAAAT
GCTTACGCTT CGTTTCAGGG CTGGGGCATG AACAACGATG CAACCTGGCA GCCCGCATTT
GCAGACGGCC CTGCAGAATT AGACGGTAAT GGCACGCGCG GCTATGCGCC GTGGGGTGCA
GCACTAGAAT TAAAGGGCTT AACAACCGAG CGCGAAGGTT TAATTTTTAC CGCAGAGTGG
GCGCCGAGTG ATGACCTAAG CGTAAAATAC GATACCCTTT ACACCGATGT GGGCTTGTTT
GAAGAAACCC CAAGTAACTG GTACCAAGGC TTGGGTAACT GGGATGGCGG CCAAAACGGC
AGCTACCGCG ATATCGAGCT AGAAGGCGAT TATGCCGCCG CTGCAACCGC TGTGGGTATA
GCCGAAGTGC GCCACGTTAT TGCCAAATAC CGCCAAGAAA GCAGCAGCAT TTCGCACGGT
ATTAACGTTA AGTACGACGG TTACGAAAAC CTGCAAATTA GTGCCGATAT AAACTACTCA
CACGCAGAGC GCGACGGTTA TTGGAATGCC ATTTGGTTCG ATCAATACGG CCAAACTATT
CGCTACGATT TTCGTGAAGG GTCAGAAGGC GTTTCCGCCC CAGATGGCGG CAATGTATTA
ACGCCTACCG CAGATGGCGC ATTAACATTT CCTAGCTGGG GGCCAGAAGA GTGGAACCAA
GCTAACGCCA ACGAAGGTAA TCACCTAGAA GACACCATGT TAGGTGGCAA TGTAGATTTC
AAATTGGCTG TAGATGCCGG TCACTTAGTG GGTGTAGATT TTGGTATACG CCATGCGGGT
CGCGAAAAAG AAAACTCGCC TACAAGTTTT GTAATGACCG ACCCAGAGCA AGCGACCGCT
ATGGATCGCC TGCCTGAAGG CTTCTTTACT ACATACGAAG TAACAGAATT TCCTTCTACA
CCACTGGTTT ACGCTGAATC TTACGATGCA TTGGCAGAAG CATTTTACGG CGGCGTAGAT
TACAGCCAAG CCGAATTGCG CAATGGCGAT TACTGGTTAG TAGAAGAAGT AAACAATGCC
GCTTATGTAA AGTTGAATTT TGAAGGTGAA TTGGCAGGCT TTGCTTATAA CGCAAACGTG
GGTGTTCGCC ATGCGAAAGC TTCGATAGAT AGCACCGGCT ACCCTGGCGG TGGCGATACG
TTGCAAAGTG TGTCTAACGA TTACAGCCAC ACCTTACCCA GCGCGACTAT CAACGTAGAT
ATACACGACG ATATGGTTGT TCGCCTGTCT GCTGCACGCG CTATATCGCG TCCACCCGTA
GATGAAATGC GAGCGGGCGA ATTTATTAAC CTTACCACCG GTGCGGCTAA CGGTAGTGCG
GGCAACCCGT ACCTCGAACC CTACATTTCA GATCAAATAG ATATTTCTTA CGAATGGTAC
TTTGCCAGCG AGTCTTTGTT TGCTGCCACA CTGTTTTATA AAGATATTTC TAACTACGTG
GGCATTGAAA CCATTGGTAC ATTCCAAGAC GAAAATGACC CAGAGCGATC ATTTACAATT
TCTGGCCCTG TGAACGGCGA TGGCGGTTAC GTTAAGGGGG TCGAGTTTAC CTTCCAAATG
CCGTTTAACT TCTTACCCGT TGAAGGCTTT GGGGTTTACT CGAACTTAGC ACTGGCCGAC
TCCAATGTTA TGGAATTTAC GCCAGTAAAT AACCCCTACA CCATGGCGGG CTTAGCCGAT
TACACCGCCA CCGCCGACCT GTGGTACAGC AACAACCGGT TTGATGCGCG CTTGGGCTAC
AAAGCCACTT CCGATTACAC CACAGGCTTT ACGTGGAACG GAGCAGAGCT AAATACCATT
GCCCCCGAGG CGAGCTTAGG TTTGAGCATG TCTTACACCT TTACCGACAA CATATCTGCC
CGCGTGCAGG CATGGAACCT TACCAACGAA CCTGCGCGTT TAACCCGCGA CAACACCAAT
GCGAGTTTAA TGCGCTATGA CGAATACGGC CGCGGCTACA TGGCGGATGT GACCTTTACT
TTCTAA
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| Protein sequence | MAHTKMHANK NAQHAKKFVP YFARTGLFAA ISMASAMAVA QDTHSENSNP MEEVTVTGMR
AALDKALDVK QNSNFVMDAL SLEDINSTPA ITIAEALVRM PGVSGVRDRG NESQAAIRGM
GPRMVFSTLN GRELATSEPG RAVRYEQFPS EMISAVEVYK SQSADLTEGG IAGTINLKTL
SPLNHSGPTY TVRAGLQYND AGADLPNYDA LGNRFSLSTV HSITDEFAIA VGYSAQTQKN
AYASFQGWGM NNDATWQPAF ADGPAELDGN GTRGYAPWGA ALELKGLTTE REGLIFTAEW
APSDDLSVKY DTLYTDVGLF EETPSNWYQG LGNWDGGQNG SYRDIELEGD YAAAATAVGI
AEVRHVIAKY RQESSSISHG INVKYDGYEN LQISADINYS HAERDGYWNA IWFDQYGQTI
RYDFREGSEG VSAPDGGNVL TPTADGALTF PSWGPEEWNQ ANANEGNHLE DTMLGGNVDF
KLAVDAGHLV GVDFGIRHAG REKENSPTSF VMTDPEQATA MDRLPEGFFT TYEVTEFPST
PLVYAESYDA LAEAFYGGVD YSQAELRNGD YWLVEEVNNA AYVKLNFEGE LAGFAYNANV
GVRHAKASID STGYPGGGDT LQSVSNDYSH TLPSATINVD IHDDMVVRLS AARAISRPPV
DEMRAGEFIN LTTGAANGSA GNPYLEPYIS DQIDISYEWY FASESLFAAT LFYKDISNYV
GIETIGTFQD ENDPERSFTI SGPVNGDGGY VKGVEFTFQM PFNFLPVEGF GVYSNLALAD
SNVMEFTPVN NPYTMAGLAD YTATADLWYS NNRFDARLGY KATSDYTTGF TWNGAELNTI
APEASLGLSM SYTFTDNISA RVQAWNLTNE PARLTRDNTN ASLMRYDEYG RGYMADVTFT
F
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