| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3862 |
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| Symbol | |
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| ID | 3967029 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4866601 |
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| End bp | 4868349 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637922959 |
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| Product | hypothetical protein |
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| Protein accession | YP_529329 |
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| Protein GI | 90023502 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00590592 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.508788 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCTAC TAAATAACAA AACCCTTCGT GCTATTTCTG TATTGTGTAG TTTAACGTTT
GTGCCCTGTG CTATTGCCGA GGTGGCGCCG CTTTGGTTGC AGTTTGAGGC CGCAAAGGCG
AATGGCGATG AGCCAACCTT GCCGGACTTT TCTTATGCGG GTTACGACTA TTCCGAGAGC
GAGCTGCCAG ACATTTCTAG TTGGGCCGTA TTTAATGTGA CGGACTACGG GGCAATAGCA
AACGACGAAA ACTACGATGA CCAAGCCATA CAGCTGGCAA TAGATGCCGC ACAAAACGCT
GGTGGCGGTG TGGTTATGTT CCCCGCTGGC AGGTTTTTAG TTAGCCCTAA CGAAACGGTG
GGCGAGAATA TTTTTATTCG CGCTAGCAAC ATAGTGCTAA AAGGCGCGGG CGCTGGTGAT
AACGGAACAG AAATATTTAA AGTAAATAAA AAAGTAAATA ACGGCGAGTA TATTTTTGAG
GTTTCGCCAA CAAGCACTGG CGAATCGGTG ATTACAACTG TAGTAGCAAA TGCACAGCGC
GAAAGTTTCG AAATAGTAGT TGCCGATGCA TCACAACTGA GTGTGGGCCA GCGTATTTTA
TTGCGAGCAG ATAGCGTGGA ATTAGCGCAA TCGTATTATT CCCCGCTTAC CATTCGCAGC
GAATGGACGC GATTACTAAA CGACGGCTTT AACCTGCGAG AAATTCACTC TATTGCCGCA
ATTAACGGCA ACACCGTGCG CCTTAGAGAA CCACTACACA TAAGCCTAAC TATAGGTTCT
ACGCCCATTC AGGTGCGTAG TTACAACATG ATAAATAACA TAGGTATAGA AGATATTCGC
TTTAAAGGTA ATTGGGATTC CTACCCCGAA GACTTCGATC ACCATAAAGA CGATATTCAC
GATTACGCAT GGAACGCACT AAGGTTAGAT AACGTAGAAA ACGGCTGGAT ACAAAACGTA
GAATTTAAAG ATTGGAACCA AGGTATTTAT ATAGACGGCT CTGCAGCACT TACCCTGCGT
AATATTACCT TTACCGGTAA GAAGGGGCAT ATGTCTATTC ATACGCGGCG CTCTTACGGT
GTATTAATAA AAGATAGTGC CGACCACGCA GGCCATCACC ACGGGCCGGG TGTTGGCTAC
TGGGGTTGCG GCACTGTGTA CCTGCGTTAC CAAATGTTAG CTGGCCAAAA TATAGATAGC
CATTCGGGCA GCCCCTACGC AACGCTGTTT GATAATGTAA CTAACGGTCA CCTTTCTAAC
AACGGCGGCC CACACGAAAG TTACCCGCAC CACGGTAAAC ATTTAGTCGC ATGGAATATG
ACTTTAGAAG GCGGGCCAGA TAGCTATAAT TTTTGGTCGG CGTCTCGCAA CGGCCACACC
TTCGCCATGC CGTATTTTAT TGGCTTGCAG GGTAAAAGCG TTACCTTTAC CGAAGGCACC
TATAGCGCTA ATGAATTGCT AGGGCAAATG GCCGAGCCTG CTTCTTTATT TGAAGCGCAA
CTTGCCTTGC GCCTTGGTAG CACTGCGCCC GAGCAACCAG AAGAAACAGA AGAACCAGAA
CAAGAGCCAG AGGGTGAAAC CGGTGGCGAG CAACAACCAA CAGAAGAAAC CCCTACACCA
CAACCCAATC AGCCAAACGC CAGCAACACA TCGGGTGGTG GAGCCATAGG TGGGCTATTG
CTCACATTGT TGATGGTGCT GGCAGCTACT ACCAAAATTA ATTACATAAC GCGCCGCACA
GGTAATTAA
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| Protein sequence | MRLLNNKTLR AISVLCSLTF VPCAIAEVAP LWLQFEAAKA NGDEPTLPDF SYAGYDYSES
ELPDISSWAV FNVTDYGAIA NDENYDDQAI QLAIDAAQNA GGGVVMFPAG RFLVSPNETV
GENIFIRASN IVLKGAGAGD NGTEIFKVNK KVNNGEYIFE VSPTSTGESV ITTVVANAQR
ESFEIVVADA SQLSVGQRIL LRADSVELAQ SYYSPLTIRS EWTRLLNDGF NLREIHSIAA
INGNTVRLRE PLHISLTIGS TPIQVRSYNM INNIGIEDIR FKGNWDSYPE DFDHHKDDIH
DYAWNALRLD NVENGWIQNV EFKDWNQGIY IDGSAALTLR NITFTGKKGH MSIHTRRSYG
VLIKDSADHA GHHHGPGVGY WGCGTVYLRY QMLAGQNIDS HSGSPYATLF DNVTNGHLSN
NGGPHESYPH HGKHLVAWNM TLEGGPDSYN FWSASRNGHT FAMPYFIGLQ GKSVTFTEGT
YSANELLGQM AEPASLFEAQ LALRLGSTAP EQPEETEEPE QEPEGETGGE QQPTEETPTP
QPNQPNASNT SGGGAIGGLL LTLLMVLAAT TKINYITRRT GN
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