Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3839 |
Symbol | |
ID | 3966988 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 4838740 |
End bp | 4840044 |
Gene Length | 1305 bp |
Protein Length | 434 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637922936 |
Product | two-component sensor PhoR |
Protein accession | YP_529306 |
Protein GI | 90023479 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5002] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR02966] phosphate regulon sensor kinase PhoR |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00000175105 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATACGCA GAGGTTTTGC CGTAGAGCTG CGCTGGTTTG TACTGTCTAT GGCAGCCGCA GCCATAGTTG GCGTAGCAGT AGGCTATTTT TTGGCAGTAA TGTGCTTAGC ACTGCTGCTG TACGTGTGCT GGTTGTTTTA CAACATCACC CGCTTAGAAG CTTGGATAAT TGCAGCACGC CGCAAAACCA ACCCGCGCAA CGAGCTATAT GGCATTTTTG GTGAAATAGC CGAAGACGTA GTGCTGCTGC GCAAACGCTA CCAAAAAGAA AAGCTGCGTT TACAAGCGGT GGTTAGCCGA GTACAAGATA TGACCTCGGC ACTAACCGAC GGCGTGGTGC TACTAGATTC GCTTGGTAAT ATTGAATGGT GGAACGAAGC CGCCAAGCAA ATGTTCGACC TGCGCGATGT AGATCACGGC CACAAATTAA CCAACATTAT TCGCCACCCG CGTTTCGTAA AATACTTCGA AAACGGCAAA TACGGCGACC CACTTGAGCT AGAAGGCATC CGCCACCCAG ACCAACACCT GCAATTTCAA ATACACCCCT TTGGCCAAGG TGAACGCCTT GTGGTGCTGC GCGACGTAAC GCGCGTTTAT AAACTCGAAC AAATGCGCAA AGACTTTGTG GCCAACGTAT CCCACGAGTT GCGTACACCC CTTACAGTGG TGCGTGGCTA CATCGAAACA CTGTCCGATG CGCCCAGCAT ACCGCCCGCG TGGGCACGCG CTCTAACCGC CATGCAGGGC CAATGTCAGC GCATGACCGC GCTTATCAAC GACCTAATTA CCCTAACCAA GCTAGAAACC GATGAGCGTG AAATACGGCA GGAAGCCGTC GACATAGGGC CACTTATTCA AACCATAATG AGCGATGCCC AAGCATTAAA TGGCGAAAGC ACGCACACGC TTATTCATAA AGGCGACGAT AATTTGGTAT TGCGCGGCAA CGAGAAAGAG CTTCGCAGCG CCGTCTCTAA CCTTGTGTTT AACGCTATGA AGTACTCGCC CGACGGCTGC AAAATTGAAG TGCAATACAC CGCCAACGAG CACGATGTAG TTATTAGCGT AAGTGATACT GGCGTGGGCA TAGACCCCAA ACACCTACCG CGCCTAACCG AACGTTTTTA CCGCGTAGAC GGCGGCCGCG CCACCACCAT GGGCGGCACA GGCCTTGGCT TAGCCATTGT TAAACACGTG CTGTTGCGCC ACGATGCCCA ATTGCGCATT AGCAGTAAAG TGGGCAAAGG CAGCACCTTT AGCTGCCACT TCCCCAAAGC TCGTTTAATT AAGCGCGCAA AATAA
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Protein sequence | MIRRGFAVEL RWFVLSMAAA AIVGVAVGYF LAVMCLALLL YVCWLFYNIT RLEAWIIAAR RKTNPRNELY GIFGEIAEDV VLLRKRYQKE KLRLQAVVSR VQDMTSALTD GVVLLDSLGN IEWWNEAAKQ MFDLRDVDHG HKLTNIIRHP RFVKYFENGK YGDPLELEGI RHPDQHLQFQ IHPFGQGERL VVLRDVTRVY KLEQMRKDFV ANVSHELRTP LTVVRGYIET LSDAPSIPPA WARALTAMQG QCQRMTALIN DLITLTKLET DEREIRQEAV DIGPLIQTIM SDAQALNGES THTLIHKGDD NLVLRGNEKE LRSAVSNLVF NAMKYSPDGC KIEVQYTANE HDVVISVSDT GVGIDPKHLP RLTERFYRVD GGRATTMGGT GLGLAIVKHV LLRHDAQLRI SSKVGKGSTF SCHFPKARLI KRAK
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