Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3798 |
Symbol | |
ID | 3966872 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 4797422 |
End bp | 4798684 |
Gene Length | 1263 bp |
Protein Length | 420 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637922895 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_529265 |
Protein GI | 90023438 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1922] Teichoic acid biosynthesis proteins |
TIGRFAM ID | [TIGR00696] bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAAATCC TCTCTCTACA AAGACAAAAA TTTTATCCTT TTTCTGTAGT GTTAGTAGAC AAAATACTTG CTCTCACAGT GTTGGCATTG TTACTTCCCG TTCATGCTTT GAACACTCTA CTGGCTATTT TTCAACGAAA GGCATTTACA CGCAGCGAAT TAAAACAAGA TGCCCTCGGC CGCGTTGTGG AACTTACACG TTGGAACGTA GGCTTGCTGC GTGAAAGTTT ACATTTGCTA AATGTTGTTA AAAACGAAAT AAGCCTTGCG GGCGTAAGCC TTAAATATGT GTGTATAGAA GAGGATATAC TCACTCTTAC GCCGCTTAAG CCAGGTTTGT TTAGCATATA CGAAATTCAA CACACCATTG GCCGTATAGA TTGCAGTCAC GGTGATACTC TACGCCAACA TGAGAGAAAT ATAACAGTGC GTTTTCAGTT GGCGATTGTT ATTAAGGCGA TAGTATGCCG TGTACTTTAC CAATCAAATA AAGCGCGTGA AGCGAGTCGC TTTAATGTAC TGGGTGTGCA TGTAGATAAT TGGTTACTCG CCGACGTGCT TAATTGGATT TTTACCGATA CCAATATTGA TACAAATACT AATACCAATA TAAATGCCAA GGGCAACTGT CGCAGCGGAT ATTTTATCAA TGTAAATTCT ATTAACTTGG CATATAGCGA TGGCGATTTT AAAAAGGTGT TAGCCAGCGC AGATTGCGCA TTGGCCGACG GGTCTGGCGT GCGCTTGGGC GCAAAACGAC TTGGGGTGCA GTTGCGCGAT AATGTAAATG GCACAGATTT ATTACCGCAT ATTTGTCGCA GAGCAATCGC AGAAGGGTGG TCGATCTATT TACTTGGCAG TGAAAAAGGT GTGGCAGCGG CAACCGCCAA AAATTTAAAG GCAACCTTTA CAGGGTTGCG CATTGCTGGT ACTCATCACG GGTTTGTTAG TGAGCAAGAT GACGAGCTGC TAGTGCAACA AATTAATCAG TCGGGTGCAG ATATAGTTTT AGTGGCAATG GGTTCGCCCA TGCAAGAAAA ATGGATAGCG AGAAACAAGG TGAACTTGCA GGCATCAACG GCGCTCGCGG TTGGCGGCCT ATTTGATTTT TATTCCGGTA AAATCCCTCG GGCGCCGGTG TGGATGCGAG AGTTGGGTAT GGAGTGGATA TACCGCTTGG CTATGGAGCC AAAGGCGAAA TTTAATCGCT ATGTAATAGG TAACCCTCTA TTTATGTGGC GTATAATGAA TGCGAAAACG TAG
|
Protein sequence | MQILSLQRQK FYPFSVVLVD KILALTVLAL LLPVHALNTL LAIFQRKAFT RSELKQDALG RVVELTRWNV GLLRESLHLL NVVKNEISLA GVSLKYVCIE EDILTLTPLK PGLFSIYEIQ HTIGRIDCSH GDTLRQHERN ITVRFQLAIV IKAIVCRVLY QSNKAREASR FNVLGVHVDN WLLADVLNWI FTDTNIDTNT NTNINAKGNC RSGYFINVNS INLAYSDGDF KKVLASADCA LADGSGVRLG AKRLGVQLRD NVNGTDLLPH ICRRAIAEGW SIYLLGSEKG VAAATAKNLK ATFTGLRIAG THHGFVSEQD DELLVQQINQ SGADIVLVAM GSPMQEKWIA RNKVNLQAST ALAVGGLFDF YSGKIPRAPV WMRELGMEWI YRLAMEPKAK FNRYVIGNPL FMWRIMNAKT
|
| |