| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3784 |
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| Symbol | |
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| ID | 3966858 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4783374 |
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| End bp | 4783904 |
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| Gene Length | 531 bp |
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| Protein Length | 176 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637922881 |
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| Product | XRE family transcriptional regulator |
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| Protein accession | YP_529251 |
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| Protein GI | 90023424 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3926] Putative secretion activating protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00000000271514 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAATTG ATGAGATGGT CAACACTATT CTTGCCCACG AAGGCGGGTT CGTAAATGAC
CCAGATGATC GGGGCGGCGC AACTAACTTT GGGGTAACAC AGTTAACCTA CGCCAAATGG
CTTGGTCGCC CAGCCAGCAT TGCAGATGTT AAAGCAATGG ATATTGAAAC TGCGAAAGAA
ATCTACCTTG CCAACTACTA CTACAAGCCG CGTATCAATG GCTTGCCCGA CGAAATACAA
CCCTTAACTT TTGACTGCGC CATTAACCAC GGGCCAATTC GTGCCATGAA GTTTGCTCAA
ACGGTAGTGA ATTTAGCGGG TTTTGGGTTA ATTACTGTGG ATGGCGTGTG TGGCCCAGAA
ACCATGCGCA GAGTAAAAGC AGCCCATGCT GAAATGGGCA ACTACTTTAT TAACGCCATG
GTAGATGAGC GGGTGAATTT TTATGAAGCG ATTATAGAGC GCGATGCATC ACAGGCGCGC
TTTAGAAATG GTTGGTTAAA ACGTGCGGAA TCGTTCCGCG TACCTGTGTA G
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| Protein sequence | MTIDEMVNTI LAHEGGFVND PDDRGGATNF GVTQLTYAKW LGRPASIADV KAMDIETAKE
IYLANYYYKP RINGLPDEIQ PLTFDCAINH GPIRAMKFAQ TVVNLAGFGL ITVDGVCGPE
TMRRVKAAHA EMGNYFINAM VDERVNFYEA IIERDASQAR FRNGWLKRAE SFRVPV
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