| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3775 |
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| Symbol | |
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| ID | 3966830 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4775707 |
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| End bp | 4777329 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637922872 |
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| Product | helix-turn-helix, AraC type |
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| Protein accession | YP_529242 |
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| Protein GI | 90023415 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4104] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGCGG CGCGACTCGG TGATATAGAT ACCGGTCACC CGCCCTCGCC CCCAACGCCC
ATTATTAATG GCAGCACCAA CGTACTTATC AATTCTAGGC CGGCCGCGCG CAAAGGCGAC
ATGCTGGTAC CGCACCACCC TGGTATTCGC AAAATTTCCG AAGGCTCTAG CAGCGTGCTT
ATTAATGGCA AGCCTGCTGC GCGCATGCTC GATGGGGTAA ACTGCGGCGG TAAAATTATT
ATTGGTTCTG GCAATGTATT TATTGGTGAT AACCCTAAAA CCGGTGGTGG TGGCGGGGTA
ACCAGCAATA TAAAAGTAGA GCAAGAGTTT GATGAATATA TCGACTCGAA ATTCAAACCA
GAAAACCAAA AGCTCACCGA CTACCAGTGG CGCCAACTAG AAGCCGATTT AGCGGTAAAA
TACCGCGGCA GCGCAGGTGC CGTAGCTACC TGGGCAGAAT ATTATCAAGA GGCAATACCC
GAAGGCCCAC CCCAATCTGC CGCCGAAGCC GAAGGCTTAA AAATAGCCCA AGCACTTAAT
AGCGCAAGCG AGCTAGATGA GCCCGAAGCA GCCGTATACA GCGAAGAAGT GCAAGCCCAA
GTAGACAAAG CCGGCCAAGC GCTGGCCCAA GCCGCCGCCC AACTCCCCGA AGGCGAAATG
ATCACCCCCG AAATGGTACA CGTGGCCGAG CAAGCGCTGG CAGCTACTGG GTATGTAGAG
CAGCCGCACT CGCACAATCA TCAAGCCAGC AAGGTTTCTG ATTTGGCCAG CCGTAAAGGC
GTATCACCTA CATCGCTAGA TGATGCCGCT AACCGCTTAC AAAGCATGGG TCTAGAAATA
AAAGAAAAAG GCTATCAACC CAAATACTCC GACGCAGAGT TAATAGCGCA AGCTAAGGCA
GGAGACGTTG CTAAAGAGCG ATTCCATGTG CGGTTTATGG AGGTGCGCCA TCAGTGGAGC
CGAGAAGATG CCGTTAAGAG CCAAGACAAC TTAACCGGCT TGCTCGGCCT GCCATTGCAA
GGCAAAACGG GCGAGGGCGC AAAATACTGG TCGACAACCT TCGACCAAAT AGAAGATGCC
GATACAGATG CAGAGCTTAT CTGCGGCATT TTGGGTTTAG ATTATAAAAA AGATGCCAAC
TATATGATGG TTGTTGTCGA CACAGAAAAA GCGGCCCCGA TTACTGGCGT AGCAAGCGTA
TCTGCAACAT TTGAAAATGT CAGCGAATTC GCCAATAGGG AACTGCCAGA TGAGTTTCCT
AAGGACTTTA CTGACTTAAC CATGAATGAT GAATATCAGA AAAAATATAA CGAGCTATTT
TCTGCTGCGA TTCAAGAGGG TGTTTTTGAA GACAAGTGGA AACCTAAAGA TGAGGAGCTT
TCTAGCTTTC TCAAAAGTAG AGGTGTCGAT GATGATAACG TGGGTGTATT GGTTAACAGG
CTGAAAATGC ACAGAATTAT AGGCAATAAT CAGTATTATG AGGGTAATGG ATTAACTCAA
AATAAGAATG AAAAAGCTGG TAAAGAGTAT GGTGTGGTAG AAACATTAAA TTTCGAAAGA
AAAAAAATAG ATCTACAAAA ACTAAAAAAT AGTGGTGCAA TTAAAATAAT AGCAATAGGT
TAA
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| Protein sequence | MPAARLGDID TGHPPSPPTP IINGSTNVLI NSRPAARKGD MLVPHHPGIR KISEGSSSVL
INGKPAARML DGVNCGGKII IGSGNVFIGD NPKTGGGGGV TSNIKVEQEF DEYIDSKFKP
ENQKLTDYQW RQLEADLAVK YRGSAGAVAT WAEYYQEAIP EGPPQSAAEA EGLKIAQALN
SASELDEPEA AVYSEEVQAQ VDKAGQALAQ AAAQLPEGEM ITPEMVHVAE QALAATGYVE
QPHSHNHQAS KVSDLASRKG VSPTSLDDAA NRLQSMGLEI KEKGYQPKYS DAELIAQAKA
GDVAKERFHV RFMEVRHQWS REDAVKSQDN LTGLLGLPLQ GKTGEGAKYW STTFDQIEDA
DTDAELICGI LGLDYKKDAN YMMVVVDTEK AAPITGVASV SATFENVSEF ANRELPDEFP
KDFTDLTMND EYQKKYNELF SAAIQEGVFE DKWKPKDEEL SSFLKSRGVD DDNVGVLVNR
LKMHRIIGNN QYYEGNGLTQ NKNEKAGKEY GVVETLNFER KKIDLQKLKN SGAIKIIAIG
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