| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3731 |
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| Symbol | |
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| ID | 3966766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4730041 |
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| End bp | 4731471 |
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| Gene Length | 1431 bp |
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| Protein Length | 476 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637922828 |
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| Product | protease DO |
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| Protein accession | YP_529198 |
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| Protein GI | 90023371 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family
[TIGR02038] periplasmic serine pepetdase DegS |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.233243 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACAAC TCACACAACA TACTCGTACT TGTCGTATAC GCAAATGGGG GCGAGCGGCT
TATTTGGCGG CTAGGTTGAG TGTGTTGCTG AGCGGATTAG TGGGTGCATT ACTGGGCGCA
AGTGTACAAC TGCACGCCGC ACTTCCAGCC AGTGTAAATG GTGAACCCTT GCCATCGCTG
GCCCCCATGC TTAAGCAAGT GAACCCTGCT GTAGTAAATA TTGCTACCTA CTCTACTTTT
CGACAGGCCT ATAACCCGCT GCTAAACGAC CCCTTCTTTC GCCATTTTTT TAACGTACCA
GATTCCTATC GCCAGCAACC GCAAACCCAA AAGCGGCAAC AAAGTGCGGG GTCTGGGGTA
ATAGTGGATG CAAAAAAGGG TGTGGTGCTA ACCAATTACC ACGTAGTGAA AGATGCCGAC
GAAGTGCAGG TTTCGCTCAT CGATGGCCGC GCCCTTATCG CTGAAGTAGT GGGCAGCGAC
CCCGAATTGG ATATAGCCGT GCTTAGGGTA AAAGCCGATG ACCTAACCGA CGTTAAAATG
GTGAATTCAA GCTTGCTAGA GGTGGGCGAC TTCGTAGTCG CCATTGGCAA CCCGTTCGGG
CTTGGGCAAA CCGTTACTAC GGGCATTGTA AGTGCGCTGG GGCGAACAGG CTTAGGTATA
GAAGGCTACG AAAATTTTAT TCAAACCGAC GCCTCTATTA ACCCTGGCAA CTCCGGCGGT
GCGCTGGTGA ATTTACGCGG TGAATTGGTG GGTATTAACA CCGCTATTAT CGCCCCTGCT
GGCGGCAATG TGGGTATTGG TTTTGCCATA CCTATTAACA TGGCTAAAGC GAGCATGGAG
CAAATACTTA AACACGGTAA GGTGCAGCGG GGCCATGTGG CGATAAGCGT GCAAGATATA
ACCCCAGACT TACGCGAAGC ATTTGCCCTT AAAAATGGCC AGCACGGGGT GGTAGTTACC
GGGGTTGGCG AAGGTTCCGA TGCGCAAAAG GCGGGCTTAC AAGCGGGCGA TATTATAGTA
ACCGTAGATG GTGAAAACAT TAATTCACGC GGCCAGTTAA GCAGCCATTT AGCGGTTAAG
GCGGTGGGCG CAAAGGTAAA AATAGGGGTT ATTCGCAAAG GTAAGCGCTT AGACATTAAC
GTGCCCATTA GCGACCCTCA CGCGGCGTTA ACCAGCGGTC AACTACATCC GCTTTTGGAG
GGGGCACGTT TTGAAAATAA CCCAGATGGA GAAGGTGTAA TCGTTGCTGC GCTTTCGCCA
AAATCTTATG CCGCGTACAG CGGCTTGCGT CCAGGTGATG TAGTGCTTGG CGCTAATGAT
TATCAAGTTG TTAACTTAGA GTCTTTTCAG CGCGCGTTAA AACGTAACAA AAAACAAGTA
TTACTGTTAG TTGCACGCGG CAACCGTGCT TTACATATTG TTATTCGGTA G
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| Protein sequence | MSQLTQHTRT CRIRKWGRAA YLAARLSVLL SGLVGALLGA SVQLHAALPA SVNGEPLPSL
APMLKQVNPA VVNIATYSTF RQAYNPLLND PFFRHFFNVP DSYRQQPQTQ KRQQSAGSGV
IVDAKKGVVL TNYHVVKDAD EVQVSLIDGR ALIAEVVGSD PELDIAVLRV KADDLTDVKM
VNSSLLEVGD FVVAIGNPFG LGQTVTTGIV SALGRTGLGI EGYENFIQTD ASINPGNSGG
ALVNLRGELV GINTAIIAPA GGNVGIGFAI PINMAKASME QILKHGKVQR GHVAISVQDI
TPDLREAFAL KNGQHGVVVT GVGEGSDAQK AGLQAGDIIV TVDGENINSR GQLSSHLAVK
AVGAKVKIGV IRKGKRLDIN VPISDPHAAL TSGQLHPLLE GARFENNPDG EGVIVAALSP
KSYAAYSGLR PGDVVLGAND YQVVNLESFQ RALKRNKKQV LLLVARGNRA LHIVIR
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