| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3729 |
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| Symbol | |
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| ID | 3966764 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4727069 |
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| End bp | 4729405 |
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| Gene Length | 2337 bp |
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| Protein Length | 778 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637922826 |
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| Product | TonB-dependent receptor, putative |
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| Protein accession | YP_529196 |
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| Protein GI | 90023369 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000373318 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.721597 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACTT TTTTTACTGC ACGTATATTG GGTGCGGGTA CTTTGGGTGC AGGTGCTTTG
GTTGCATGTA CATTTACCAG CGCGGTTGCG CAACAAGCCG AATCTTTAGG CGAAATAGAA
ACGCCTCACA TTGATCACTT AGAAGAAGTG CATGTAATTA GTTCGCCGCT TAATCAAACC
CAGCAAGACA CCGCATTAGC CATAACAATG CTTAAAGATG AAGCCTTACG CAATGCTGCC
AGTGGCAGCT TAGGTGAAAC GCTAAGTCAG CAAGTGGGTA TTCACAGCGC GAGTTTTGGT
GCTGGTGTTG GTCAGCCAGT GGTGCGCGGC CAAACTGGTA ACCGCGTGGC GGTGTTGCAA
AATGGTATAG CAGAGTTGGA TGCCGCTACT GCCAGCCCCG ACCACGCAAA CAGCGTAGAG
CCGTTAATCG CCAAGCGGAT AGAAGTTATT CGCGGCCCAG CAACCTTACT TTACGGTAAC
GGCGCCATAG GTGGTGTGGT TAATGTGGTG GATAACCGCA TTCCAGAACA AACGCTAGAA
AACGCCGTCG CGCTTGAGGC ACGCTACAAC AGCGTAAACG ATTTAAACAG CCAAGTTATT
GTTATTGAAA ATAACCTAGG CGCGTTGAAT TTTCACTTAG ATGCTTCGCG TCGCCGTGCG
GGCGAACTAA CCATACCCGT TGCAGCAGAA TCTGAAGCGC TGCACGCATT GCATGAAGAT
GACGAACACG ACGAGCATGA GGAAGAAGAG GGTCTTGAGG AGGGACATGA AGAGGATCAC
GCCGATGAAC ACTTAGACTC AAGCAGCGGT GTATTAGCAA ATTCAAGTTT AAAAGATTGG
AGCGCAAACA TCGGTGCTAG TTGGGTGCTG GATGCTGGTT TTGTAGGTTT AAGTTACGGC
AAAGTACGCA AGAATTACGG TTTACCCTTG GGCACCCATG TACATGCAGG GCACGACGAG
CATGATGAAG AAGAGGGTGT AGAAGAGGGT GTAGAAGAGA GTGCAGAAGA GAGTGCAGAA
GAAGAGCACC ACGAAGAAGT AGAAAAAGTG CGCATTGCCA TGCAAACAGA ACGTTGGGAA
TTTAAAACTC AGTGGGATTT AAGCAATAAC CTAATACAGC AATTAGAAGC TAGTGCGAGC
TATACCGAAT ACAAGCATCA AGAGTTGGAA TATTTTGTTC ATGAAGAACA TGAGGACGAG
CATGAAGAAC ATGAGGAAGA ACATGTTGAA TTAGAAGTTG AAACTGGCAC CGAATACCGT
CGCAGCGGTA GCCAATTAAA ATTAATTGCT CGGCAGCAAC CTGCAACACT GCTTAATGGT
GAGTTAACCG GCGCTTGGGG TGTGCAACTT GCTAATGCAA CCATGCAAGC CGAAGGGGAA
GAAGCGTTTA TCCCTCACAC CAAACTGCGT TCGAATGCAG TATTTGTAGT GCAGCAATTA
ACGCAAGAAA ATTGGATATT CGAAACGGGC TTGCGGGCAG AAAGCCTGCA ACTTAAACCC
GATGCCTGTG ATGAACAAAA TAATACGTTT AGCGCAAGCG GCTCGGTTGT ACGTAAATTA
AATAACAATA GTAATTTAAC CGCGGCTTAT AGTGTGTCCC AGCGCGCCCC AGCTAGCGAA
GAGCGCTATT CAAATATAGA TATTACAACT TGCCAATTAA AGGCCGACCC AGAAACGTGG
GTAGCACATG GCGCCACCGC GCAATATGAA TTAATGGCGA CAGGGTTAGA AAACGAAACT
GCCCACAATA TGGAAATACG CTGGCGCAAA CATACAGGCG ATATTCGTGC AGAGTTTACG
TTATACCGCA GCAACGTAAA TAATTATGTT TACTTAGCGC GTACAGGTGA AGAATTTGAA
GGCCTACCCA TTGCGCAATA CGAGCAGGCC GATGCGTATT TCCAAGGTTG GGAAGCAGAA
GTAACGTTGC CGCTAGCGGA GTGGCCTGCA AGCCATTGGG ATATAACCCT ATTTACCGAT
GGTGTGCAGG CGCGTTTGCA AAGTGGCGAC AATCTACCGC GTATTCCGCC ACTGCGTATT
GGCGGCCAGC TAAATTGGCA CAGCGATAAT TGGGCGGCGA GATTGCGTGC AACGCATGTG
GCGAAGCAAG ATAACCTTGC CGCATTCGAA ACGCCCAGCC CTAGCTATGT ATTAGTGGAT
GCAAATATGG ATTATCACTT TCATATAAAT GTTGCTAACA AAGAATATGA AGCCGCCGTA
TTTTTAAAAG CGAATAACTT ACTAAACGAA GAAATACGCC ACCATACAAG CTATGTAAAA
GACGTAGCAC CTGGTGCTGG ACGTGGCATA TTGATGGGGT TACGAGCGAG TTTTTAA
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| Protein sequence | MKTFFTARIL GAGTLGAGAL VACTFTSAVA QQAESLGEIE TPHIDHLEEV HVISSPLNQT
QQDTALAITM LKDEALRNAA SGSLGETLSQ QVGIHSASFG AGVGQPVVRG QTGNRVAVLQ
NGIAELDAAT ASPDHANSVE PLIAKRIEVI RGPATLLYGN GAIGGVVNVV DNRIPEQTLE
NAVALEARYN SVNDLNSQVI VIENNLGALN FHLDASRRRA GELTIPVAAE SEALHALHED
DEHDEHEEEE GLEEGHEEDH ADEHLDSSSG VLANSSLKDW SANIGASWVL DAGFVGLSYG
KVRKNYGLPL GTHVHAGHDE HDEEEGVEEG VEESAEESAE EEHHEEVEKV RIAMQTERWE
FKTQWDLSNN LIQQLEASAS YTEYKHQELE YFVHEEHEDE HEEHEEEHVE LEVETGTEYR
RSGSQLKLIA RQQPATLLNG ELTGAWGVQL ANATMQAEGE EAFIPHTKLR SNAVFVVQQL
TQENWIFETG LRAESLQLKP DACDEQNNTF SASGSVVRKL NNNSNLTAAY SVSQRAPASE
ERYSNIDITT CQLKADPETW VAHGATAQYE LMATGLENET AHNMEIRWRK HTGDIRAEFT
LYRSNVNNYV YLARTGEEFE GLPIAQYEQA DAYFQGWEAE VTLPLAEWPA SHWDITLFTD
GVQARLQSGD NLPRIPPLRI GGQLNWHSDN WAARLRATHV AKQDNLAAFE TPSPSYVLVD
ANMDYHFHIN VANKEYEAAV FLKANNLLNE EIRHHTSYVK DVAPGAGRGI LMGLRASF
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