| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3678 |
|---|
| Symbol | |
|---|
| ID | 3966635 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 4662609 |
|---|
| End bp | 4663283 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637922775 |
|---|
| Product | DEAD/DEAH box helicase-like |
|---|
| Protein accession | YP_529145 |
|---|
| Protein GI | 90023318 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2003] DNA repair proteins |
|---|
| TIGRFAM ID | [TIGR00608] DNA repair protein radc |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.00158019 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0453807 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATAA CCGATTGGCC CATTGAAGAA CGCCCCCGCG AAAAACTTCT TAACCGAGGC
GCACACGCGC TTTCCGATGC TGAATTACTG GCAATATTCC TGCGCACCGG CGTGAAAGGT
AAATCCGCCG TCGATTTGGC GCGCGAGCTA CTGGCTTACT TTGGCGGCTT GCGACCGCTC
TTAGAAGCGT CACAACAGGA CTTTTGCCAA GCCCAGGGCT TGGGCAACGC CAAATTCAGC
CAGCTGCAGG CTGTACTGGA AATGTCCCGT CGGCATTTAG CCGCAGCGCT CGAACAAAAA
ACTTCACTTA CCAGTACCAC CGCCGTTAAA CAGTTTGTGA GTGCGCAACT GCGTCATCGT
CAAAGCGAAG TATTTGCGCT AATACTGTTA AATACACAAA ACCAGCTAAT TAAGTTTGTA
GAGCTGTTTA ACGGCACTAT CGATAGCGCC TCGGTGTACC CCCGCGAAGT GGTTAAAACG
GCCCTTAGCC ACAATGCGGC GGCGGTTATC CTCGCTCACA ACCATCCATC TGGTATTGCC
GAGCCCAGCG AGCCAGATAA AGCCATTACC AAACGCCTAC AACAAGCGCT ACAATTGGTG
GACATTCGCA CTTTGGACCA CCTAGTGGTG GGTGACACCG AAGCGGTATC ATTTGCAGAA
AGAGGCTGGA TTTAA
|
|---|
| Protein sequence | MAITDWPIEE RPREKLLNRG AHALSDAELL AIFLRTGVKG KSAVDLAREL LAYFGGLRPL
LEASQQDFCQ AQGLGNAKFS QLQAVLEMSR RHLAAALEQK TSLTSTTAVK QFVSAQLRHR
QSEVFALILL NTQNQLIKFV ELFNGTIDSA SVYPREVVKT ALSHNAAAVI LAHNHPSGIA
EPSEPDKAIT KRLQQALQLV DIRTLDHLVV GDTEAVSFAE RGWI
|
|---|
| |