| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3677 |
|---|
| Symbol | |
|---|
| ID | 3966634 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4661141 |
|---|
| End bp | 4662412 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637922774 |
|---|
| Product | phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase |
|---|
| Protein accession | YP_529144 |
|---|
| Protein GI | 90023317 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0452] Phosphopantothenoylcysteine synthetase/decarboxylase |
|---|
| TIGRFAM ID | [TIGR00521] phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0941963 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACCC TAACCAATAA ACGCGTTTTG CTTGGCGTAA CCGGCGGAAT AGCGGCCTAC
AAAAGTGCAG ACTTAGTGCG CCGCTTGCAG GATGCCGGTG CCGATGTGCG TGTGGTGATG
ACCCGCGCGG CACAAGAGTT TATTACCCCG CTTACCATGC AGGCACTTTC TGGTAAGCCT
GTGCACACCG AGCTATTAGA TACGCAGGCC GAGGCGGCCA TGGGGCATAT TGAGCTGGCG
CGCTGGGCCG ATGTTATTTT GGTTGCCCCT GCCAGCGCAG ATTTTATTGC CAAACTTAGT
CACGGTGAGG GCAGCGATTT ACTGTCTACC CTGTGCTTGG CTTCCAAGGG GCTTATTGCC
GTGGCGCCAG CCATGAATCA AGCCATGTGG GCAAGCCCTG CCACGCAAGA TAACCTAGCG
CTTATTGCCA AGCGAGCAGT GCATATTATT GGCCCGGCTG CCGGTAGCCA AGCCTGTGGC
GATGTAGGTA TGGGCAGAAT GCTTGAGCCA CTCGCCATAT GCGAAGCGGT CGCGGGCCTG
TTTCAGGCTG GTAGTATGAC GGGTCGCAAA GTGGTGATTA CTGCAGGCCC CACGCGCGAG
GCCATAGACC CTGTGCGATA TATCTCCAAC CACAGCTCAG GCAAAATGGG CTATGCCCTA
GCGCAAGCCA TGGCAGAGGC AGGGGCTCAC ACTATACTTG TGAGCGGCCC CACCCAGTTG
CCGGTGCCAG AGCGCGTTAC GCGAATAAAT GTAGAAAGCG CGCTAGAAAT GGCCGCGCAA
GTAGAGGCGA GTGTAGAAGG GGCCGATGTG TTTATTGGTG CTGCTGCCGT TGCCGATTAC
CGCCCTGCGA ATGTGGCGCA ACAAAAGTTA AAAAAGACCG AAGGGATGAG CAACACCATA
GAATTGGTGG AAAACCCCGA TATTATTCGC GCGGTGGCGG AGCGGGCAGA TAGGCCCATA
ACCGTAGGTT TTGCTGCAGA GACAAAAGAT GTACAGCAAT ATGCCGCCTC TAAGTTGCAC
GCTAAAAAGC TCGATATGAT TATTGCCAAC GATGTGTCGC AAGTGGGTAT TGGCTTTAAC
AGTGACAATA ACGCTGTATG GGTATTGCGC CGCAAAGCGC CATTAAATGC GCATGATGCG
GCTAGCGGGG GCAGCGAAGC GAGTGCAGCC CTGTTAGAAG AATCAATAGA TCAAATGAGT
AAGGCGCAAT TATCGCGCGT GTTAGTTACA AAAATAGCAG ACTTTTTTAA ACAGGCAGAA
GCCGTTAAAT AA
|
|---|
| Protein sequence | MNTLTNKRVL LGVTGGIAAY KSADLVRRLQ DAGADVRVVM TRAAQEFITP LTMQALSGKP
VHTELLDTQA EAAMGHIELA RWADVILVAP ASADFIAKLS HGEGSDLLST LCLASKGLIA
VAPAMNQAMW ASPATQDNLA LIAKRAVHII GPAAGSQACG DVGMGRMLEP LAICEAVAGL
FQAGSMTGRK VVITAGPTRE AIDPVRYISN HSSGKMGYAL AQAMAEAGAH TILVSGPTQL
PVPERVTRIN VESALEMAAQ VEASVEGADV FIGAAAVADY RPANVAQQKL KKTEGMSNTI
ELVENPDIIR AVAERADRPI TVGFAAETKD VQQYAASKLH AKKLDMIIAN DVSQVGIGFN
SDNNAVWVLR RKAPLNAHDA ASGGSEASAA LLEESIDQMS KAQLSRVLVT KIADFFKQAE
AVK
|
|---|
| |