Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3674 |
Symbol | slmA |
ID | 3966631 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 4656948 |
End bp | 4657547 |
Gene Length | 600 bp |
Protein Length | 199 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637922771 |
Product | nucleoid occlusion protein |
Protein accession | YP_529141 |
Protein GI | 90023314 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.00408157 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.151909 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAATACAA ATAATAAGAA GCCTCGGCGC CAACAAATTT TGGAAGCATT AGCGAGTATG CTTGAGGCTA GCCCTGGTGC GCGTATAACA ACGGCCGCAC TGGCTAAAGA AGTAGGGGTG TCGGAGGCAG CGCTTTACCG GCACTTCCCA AGCAAATCCA AGATGTTTGA GGGTTTGATT GAGTTTATTG AAGAAACTAT TTTTACCCGT GTTTCTATTA TAACTGCAGA GCCTATAGAT GCTTTAGAGC GCTGCCAGAA AATTCTCCAC TTATTGCTTG CCTTCTCTGA GCGCAACCCA GGTATTACCC GTATTCTTAC TGGTGATGCT TTGGCTGGCG AAACTGAACG TTTGCGTACC CGCGTAAGTC AATTATTTGA TCGCTTAGAA ACCCAGTTAA AACAAATTTT ACGCGATGCA GAAATTCGAG ACGGCATGCA CTTTGGTTTA AGTGTGGCAG CCACGGTGAA TTTAATGTTG GTAAGTGCCG AAGGAAAAAT AGCGCAGTTT GTAAGAAGCG ATTTTAAAAA GTTGCCGACG GAATCTTGGC AGGAGCAGTG GCCTTATTTG GTGCGCGGCT TCGTAGTAGA AACCGCTTAA
|
Protein sequence | MNTNNKKPRR QQILEALASM LEASPGARIT TAALAKEVGV SEAALYRHFP SKSKMFEGLI EFIEETIFTR VSIITAEPID ALERCQKILH LLLAFSERNP GITRILTGDA LAGETERLRT RVSQLFDRLE TQLKQILRDA EIRDGMHFGL SVAATVNLML VSAEGKIAQF VRSDFKKLPT ESWQEQWPYL VRGFVVETA
|
| |