Gene Sde_3672 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3672 
SymbolpyrE 
ID3966629 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp4655455 
End bp4656096 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content50% 
IMG OID637922769 
Productorotate phosphoribosyltransferase 
Protein accessionYP_529139 
Protein GI90023312 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0461] Orotate phosphoribosyltransferase 
TIGRFAM ID[TIGR00336] orotate phosphoribosyltransferase 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.145212 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGCGT ACCAAAAAGA TTTTATTCAG CTGGCCTTAA AGGCCCAAGC CCTTAAATTT 
GGCGAATTTA CGCTTAAATC TGGCCGTGTA AGCCCTTATT TTTTCAATGC GGGCCAGTTT
CAAACCGGCT CGGCACTCGC TAGCCTTGGC AGGTTCTATG CACAAGCCCT TGTAGACGCT
GGCGTTGAAT TCGACATGAT TTTTGGCCCA GCCTATAAAG GCATCCCATT AGCGACCACT
ACCGCCACCG CGCTGGCCGA CCATCACCAA AAAGACATGC CATTTGCTTA CAATCGCAAA
GAAGTAAAAG CGCACGGAGA GGGCGGCACC CTTGTTGGCG CACCAATTAA AGGCCGTGTT
GCCATAATTG ACGACGTGAT CACCGCAGGC ACAGCGGTTC GTGAAGTACT ATCTTTAATT
GATGCCGCAG GCGCTAAACC CGCCGCGATA GTGGTAGGCT TAAACAGGCA AGAGAAAGGC
CAAGGTGAGC TTTCTGCTAT TCAAGAGCTG GAACAAGAAA CCGGTGTACC GGTCATAAGT
ATTATCAACC TAAATCATGT TCTGCAGTAC CTTGAAACCC AAGGTGACAG CGAAAACCTC
GCTAAGGTTA CTGCCTATCG CCAACAATAC GGCGTAGAGT AG
 
Protein sequence
MQAYQKDFIQ LALKAQALKF GEFTLKSGRV SPYFFNAGQF QTGSALASLG RFYAQALVDA 
GVEFDMIFGP AYKGIPLATT TATALADHHQ KDMPFAYNRK EVKAHGEGGT LVGAPIKGRV
AIIDDVITAG TAVREVLSLI DAAGAKPAAI VVGLNRQEKG QGELSAIQEL EQETGVPVIS
IINLNHVLQY LETQGDSENL AKVTAYRQQY GVE