| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3670 |
|---|
| Symbol | |
|---|
| ID | 3966627 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 4652638 |
|---|
| End bp | 4654047 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637922767 |
|---|
| Product | argininosuccinate lyase |
|---|
| Protein accession | YP_529137 |
|---|
| Protein GI | 90023310 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0165] Argininosuccinate lyase |
|---|
| TIGRFAM ID | [TIGR00838] argininosuccinate lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.122063 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.27596 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTATGA GCCAAGAAGA GAATCCTGTT AAGCCCTGGG GCGGACGTTT TAGTGAACCC
ACAGACGCCT TTGTTGAACG TTTTACCGCC TCGGTAACCT TCGACCAACG CCTTTACCAC
CACGACATTA ACGGCTCGAT TGCCCATGCA ACCATGCTTG CAAGTGTTGG CGTTCTTTCT
GAAGATGAAA AAACAGCCAT TATCGACGGC CTAGAAGCCA TTCGCAGCGA TATTGTTGAG
GGTAAATTTG ACTGGTCTAT CAGCTTAGAA GACGTTCACA TGAACATCGA AGCTGAACTT
ACCAAGCGCA TTGGCATTAC CGGTAAGAAA CTTCATACCG GACGTTCGCG CAATGACCAA
GTTGCCACAG ATATTCGGCT TTATTTACGC GATGAAATAG ACAACATAGC CAAAGAACTT
ACCCGCCTGC AAAGCGGTAT TCTGGATTTG GCCGAACGCG AAGCCGACAC CATTATGCCC
GGCTTTACCC ATTTGCAAAC GGCGCAGCCG GTAACCTTCG GCCACCACTT AATGGCGTGG
TACGAAATGA TGACCCGCGA TTACACTCGC CTAATGGATT GTCGTGAGCG CTTAAACCAA
AGCCCACTGG GTGCGGCGGC ACTAGCTGGC ACCACTTACC CGATTGATCG CGAGCAAACA
GCTGCGCTAT TGGGCTTTAA TCACCCAACC CGCAACTCGC TCGACTCGGT AAGCGATCGC
GATTTCGCCA TAGAATTTAG CGCTTTTGCC GCTATTTTAA TGACTCACCT TTCACGCGCC
AGCGAAGAGT TAGTACTTTG GGCTTCTGCA CAATTTAACT TTATAAACTT ACCAGACCGC
TTCTGCACTG GCTCATCGAT TATGCCGCAA AAGAAAAACC CCGATGTGCC AGAGCTTGTA
CGCGGTAAAA CCGGTCGTGT TAACGGCCAC CTTATTAGCT TGCTCACGCT AATGAAGTCG
CAGCCTTTGG CATACAACAA AGACAACCAA GAAGACAAAG AGCCGCTGTT TGACGCTATC
GACACCGTAA AAGATTGTTT GCGCGCTTTC GCCGATATGG TGCCCGCCAT AGAAAGTAAA
AAAGAATCTA TGTACGAAGC CGCCAAACGC GGGTTCTCGA CAGCGACAGA CTTGGCCGAC
TACTTGGTGC GCAAAGGTAT TCCCTTCCGC GATTCACACG AAGTAGTAGG TAAGGCCGTT
GGCTACGGTG TAGAAACCGG TAAAGACCTA TCTGAAATGA CACTAGAAGA ATTGCAGGGC
TTCTCTAAAG AGATACAGCA AGACGTATTC GACGTGCTCA CCCTTGAAGG CTCTGTAGCG
GCAAGAAACC ACATTGGCGG AACCGCACCT GCACAAGTGC GCATAGCAGT AGAAAATGCC
AAGCAGGAGT TAGAGGGAAG AAACAGCTAA
|
|---|
| Protein sequence | MTMSQEENPV KPWGGRFSEP TDAFVERFTA SVTFDQRLYH HDINGSIAHA TMLASVGVLS
EDEKTAIIDG LEAIRSDIVE GKFDWSISLE DVHMNIEAEL TKRIGITGKK LHTGRSRNDQ
VATDIRLYLR DEIDNIAKEL TRLQSGILDL AEREADTIMP GFTHLQTAQP VTFGHHLMAW
YEMMTRDYTR LMDCRERLNQ SPLGAAALAG TTYPIDREQT AALLGFNHPT RNSLDSVSDR
DFAIEFSAFA AILMTHLSRA SEELVLWASA QFNFINLPDR FCTGSSIMPQ KKNPDVPELV
RGKTGRVNGH LISLLTLMKS QPLAYNKDNQ EDKEPLFDAI DTVKDCLRAF ADMVPAIESK
KESMYEAAKR GFSTATDLAD YLVRKGIPFR DSHEVVGKAV GYGVETGKDL SEMTLEELQG
FSKEIQQDVF DVLTLEGSVA ARNHIGGTAP AQVRIAVENA KQELEGRNS
|
|---|
| |