| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3660 |
|---|
| Symbol | |
|---|
| ID | 3966617 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 4641724 |
|---|
| End bp | 4642605 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637922757 |
|---|
| Product | GGDEF |
|---|
| Protein accession | YP_529127 |
|---|
| Protein GI | 90023300 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.419761 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAATACC CATTCAAAAT ACTTACCACT GTTACATGTT TGCTCACTGC TATTTATACG
CATGGCGAAT CGGTTGATAT CACCATCAAT AAACCCCGTA GCAATAGCAC GTATATGCTA
GATCTAATGA AGTTAGCGCT TTCTTATTCC GATAAGCACT ATAATTATTT AGAAACGTCA
GAAACACTTA CCCGCAGTGC GCAGGTGGAA GCGTTGCGTA ATGGTGAGCT TACGGTTATG
TGGGGCGGCA CCTCTGATCA GATGGAACAG GATTTTACCC CCGTTCGCAT AGATGGCTAC
CGAGGCCTTA TGAGCTTGCG TTTTTTTATT ATTCGCGAAG GGGAACAACA CCGATTCGAT
TCTATTTATA GCGCAAACGA CTTAAAACAG TTTAAATTTG GCCAGGGTAA AACCTGGCAA
GACGGCAATA TTTTGCAGCA GGCAGGTTTT AAAGTGGTAA GAACAGTGAA AAAAGAAGGC
CTGTTTCATA TGCTAGACGG CGACCGGTTT GACGCCTTTC CGCGTGGTGC CACCGAAGCC
TGGGAGGAAG TGGCAAAGTA CAAGCAACTC CCCCTCACCG TAGAAAATAA ATTGGTGCTC
TCTTACACAT TACCAACTTA TTTTTTTGTG AATAAAAACC ACCCGCAATT AGCGGCCGCA
ATAGAGCAAG GTCTAGAGCG TGCCATTGCC GACGGTCAAT TTGACGATTA CTTTTATAAC
AACGATCGGG TGCGAGAATT TCTAAAGCGA GCGCAGCTCG ATAAACGTCG AGTAATAAAA
ATAAATAACC CTTTTCTGCC TAAAGCCACT CCCCTAGATC GAGATGAGTT ATGGCTCGAT
TTAAGCGAGC TTGCAGAGGG GGCTAAAAAC TACGGTTTAT AG
|
|---|
| Protein sequence | MKYPFKILTT VTCLLTAIYT HGESVDITIN KPRSNSTYML DLMKLALSYS DKHYNYLETS
ETLTRSAQVE ALRNGELTVM WGGTSDQMEQ DFTPVRIDGY RGLMSLRFFI IREGEQHRFD
SIYSANDLKQ FKFGQGKTWQ DGNILQQAGF KVVRTVKKEG LFHMLDGDRF DAFPRGATEA
WEEVAKYKQL PLTVENKLVL SYTLPTYFFV NKNHPQLAAA IEQGLERAIA DGQFDDYFYN
NDRVREFLKR AQLDKRRVIK INNPFLPKAT PLDRDELWLD LSELAEGAKN YGL
|
|---|
| |