Gene Sde_3640 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3640 
Symbol 
ID3966597 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp4617304 
End bp4618338 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content52% 
IMG OID637922737 
Producttwitching motility protein PilT 
Protein accessionYP_529107 
Protein GI90023280 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT 
TIGRFAM ID[TIGR01420] pilus retraction protein PilT 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATATTA CTGAACTCCT CGCTTTCTCT GCCAAGCAGG GAGCATCGGA TTTACACCTT 
TCGGCGGGTT TGCCGCCCAT GATTCGTGTG GATGGCGATG TACGCCGCAT TAACTTGCCG
CCGATGGAGC ACAAGCAAGT CCACGGGCTA ATTTACGACA TTATGAACGA CAAGCAGCGC
AAGGATTTCG AAGAATTCCT CGAGACTGAC TTTTCGTTTG AAGTGCCCGG TGTGGCGCGC
TTCCGTGTTA ACGCCTTTAA CCAAAACCGC GGCTCTGGTG CGGTGTTTCG TACCATTCCT
TCCAAAGTGC TTACCATGGA AGAATTGGGT ATGGGGCAAG TGTTCCGCGA TGTATCTTCG
GTGCCGCGCG GCTTGGTGTT GGTAACCGGG CCGACCGGTT CGGGTAAGTC CACCACCCTT
GCGGCCATGA TCGATTATAT TAACGACAAC AAATACCACC ATATTCTTAC CATCGAAGAC
CCGATCGAAT TCGTGCACGA AAGTAAGAAG TGCTTGGTAA ACCAGCGTGA GGTGCACCGC
GATACCCACG GCTTTGCTGA AGCACTGCGC TCGGCACTGC GGGAAGACCC CGATATTATT
CTGGTGGGTG AGCTGCGTGA CTTGGAAACC ATTCGCTTGG CACTAACCGC GGCGGAAACC
GGTCACTTGG TGTTCGGCAC CTTGCACACC ACCTCGGCGG CCAAAACCAT TGACCGGGTA
GTGGATGTAT TCCCCGCTAA CGAGAAAGCT ATGGTGCGTT CTATGTTGTC GGAATCCCTC
GAAGCGGTTG TTTCGCAAAC ACTTTTGAAG AAAAACGGCG GTGGCCGTGT AGCAGCGCAC
GAAATTATGC GCGGCACCTC AGCAATTCGT AACTTAATCC GCGAAGATAA GGTTGCGCAA
ATGTATTCTG CTATTCAAAC CGGTAGTGCG GTGGGCATGC AAACAATGGA TCAGTGTTTG
GCCGATCTTG TTGAGCGCCG CATAATTAGT CGCGATGTAG CGAAAGAAAA AGCAAAAATG
CCCGATCAGT TCTAA
 
Protein sequence
MDITELLAFS AKQGASDLHL SAGLPPMIRV DGDVRRINLP PMEHKQVHGL IYDIMNDKQR 
KDFEEFLETD FSFEVPGVAR FRVNAFNQNR GSGAVFRTIP SKVLTMEELG MGQVFRDVSS
VPRGLVLVTG PTGSGKSTTL AAMIDYINDN KYHHILTIED PIEFVHESKK CLVNQREVHR
DTHGFAEALR SALREDPDII LVGELRDLET IRLALTAAET GHLVFGTLHT TSAAKTIDRV
VDVFPANEKA MVRSMLSESL EAVVSQTLLK KNGGGRVAAH EIMRGTSAIR NLIREDKVAQ
MYSAIQTGSA VGMQTMDQCL ADLVERRIIS RDVAKEKAKM PDQF