Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3629 |
Symbol | |
ID | 3966586 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 4601147 |
End bp | 4608157 |
Gene Length | 7011 bp |
Protein Length | 2336 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637922726 |
Product | putative CheA signal transduction histidine kinases |
Protein accession | YP_529096 |
Protein GI | 90023269 |
COG category | [K] Transcription [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0643] Chemotaxis protein histidine kinase and related kinases [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGAGATA AACGAAATTT CGCAGCGTTA GAATGGGTTA TTGGAGAAAT CTCCGATACC CTTAAAGACG CTCGACAAGC GCTTGAAGCC TACGTCGAAG ATCCAAAAGA TTCGACGCGG ATGCGCTTTT GCCTGACCCA TATTCACCAA GTGCATGGCA GCTTGCAGAT GGTGGAGTTT CACGGCGCCT CACTGTTAGC CGAGGAAATG GAGCACACTG CACAGGCCAT TATTAATAAC GATGTAGCCA GCGCCCCTGA AGCACAAGAA GTGCTTATGC GCTCTATGTT GCAGCTTCCT ATTTATCTCG ATCACGTAAA AATACACAAA GAAGATCACC CAGGTGTTGT GCTGCCTTTG CTGAACGATC TTCGCGCGGT GCGCAAACAA AGCTTCTTAA GCGAGACCAA CTTATTCTCG CCAGATATGA GCGCCGCCGA GCGCAAATCT GTAAAACCGC ACCCTGTTAC TCAAGATGCA GCCAAGCTTA CTCAAGTGCT TAAAAAACTG CGGGAAATGT ACCAGTTTTC TGCAGCCAGT GTATTGCGCG GCATAAAAAT AGACGAAAAC CTCACTTACA TAGATAAAGT GATGGGCCGT TTAGAGTTGT TAACTCGCGG CACAACCTGT CACGCAACGT GGGATATTTC CGCTGCGCTA GTGGATGCGC TGCGTCGCGA CGATTTAGAG CTAAGCGTTG CTGTGCGCGG CCTATTGCGC TTTTTGGCGC GAGAGCTGCG TATTTTAGGT GAAAAAGCGC CGCAATCTTT AGCGCGCAAG CCACCGGTTA ACCTACTTAA AAATTTACTT TACTACGTTG GCAAAGCCGA CGCAGGCAGC GAGCGCGTTG CGCGCATTCG CGCAGAATAT AAATTAGATA CCGCCGAATT CGACTCGGGT TATGGCGGCG TGCGCAGCGA CGGCGATGGC TTAAATGCGC CAGACCCAGA AGCCATCCGC TCGGTTGTGG TTGCACTGCA AGAAGAACTT AACACCGTAA AACATATCCT CGATATCTGC CTCACCGGTC AAGGTAACCC AGAAGGTTTG GCCGAAGTAT TGCCCGTTGT TAAACGCGTT GGCGATACGC TTGCAGTATT AGGCATTGGC GATTTACGCA AGCAAATAGT CGAGCAGGCT GATGTGCTCG AAAAAATGTC TCAGCAAAAC AGCTTAGACG AAGACGAATT AATGCAAGTT GCCACTCGCG TAATAGATGT AGAGCACAAG CTCGATGCTA TTTCGAAAGT GGTGGGCAAA AGCCGTGATA TTAACGATAT CAACGAGCGC GAAATCGAAA TCGACCAAGC TAAGGCAACC GTTATTAACG AGTGTCGCCA CGGCTTAGAA AAAGCGAAAG ACGCAATTGT CGAATACATC TCGTCTAAGT GGGATGTAGC CCAGCTCGAA AATATTGGTG GCTTGCTACA CGATATTCGC GGCGGCTTAG ATATGATTCC TCTGCCGCGC CCAGCAGCAA TCATGGATGC CTGTAATCGT TACATCCAAG AAGCACTGTT AAGCGGCGAA ACACAACCTA GCTGGAAAGC GCTTGATGCA CTGGCCGACG CTATGGCGAG TGTGGAGTTT TATCTCGAGC GCTTATCGGT AGATTTAGAC GGCGATGCCG ATCAATTTTT AGATATAGCA GAAGAAAGTG TTGCATCACT TGGCTTTGCT GTAACGTCAC GCCCTGTAGT GCCATCTCAA GTTATCGAAA CTGAAACGCC TGTTGCCGAA GGTAGCTTTG CGGCCGATAC GCAGGCAGAC GCAGTGCGAG ATCAGAGCGG GCAAGAAGCA AGTTCGCAAG CAGAGAGCGC GCAGCAAGAA CAGCCTGCAG AAAGCTTCGA CCAAGGCGCA GAAGCTGCTT ATGAAGCACA AGAGCCTGAA GACAACACCT TAGACTCTGC ATTTGCCAAC CTGCCACAGG TCGAAATAGA CGAGCCGCAA GAGTCTGTTG AAAACGAAGC TAGCGATGTA AGTGCCGTAA GCGACGAAAG CACAGCAGAC TATAGCGAGC AACCAAGCAG CGATAATGCC TTTGGCCAAC AAGATACCGC TAGCTACGAA GCGCCTCAAA CCGAGCCGGC AGGCGCGAGT GTAGAAGAGC AGCAACCTGC ACAAGACCCA GCGGATGCGC CAATTTCATT AGATATGATC TCTGTAGACG ACGAGCCTGT CGCCGAAGAA GAGAGTGACA TCGATGAAGA AATTATCGAA ATTTTTATCG AAGAAGCGGG CGAAGTTTTA GAAACATTAG AAGAGTACTT CCCCAAGTGG CGTGCCGACC CTACCGATAA CGACTCACTG GTTATTGTTC GCCGTGCCTT CCACACCCTC AAGGGCAGTG GTCGCATGGT AGAAGCCTAC GATGTAGGTG AATTGGCTTG GTCGGTAGAA AATATGCTTA ACCGCATTAT CGACAAAACC GTTCCCTATA CTGCAGCGCA CGGCAATTTT ATTCAGCTGG TGCTCGAGCT AACACCAACG CTGGTAGAAG CATTTAAAAA CCGCACCGCC AACCCACAAA AAGCGCTTAC CGAAACCTAT ATGGGGTACG GGGCAGCCTT AGCCGAGGGG AGTATCCCCG ACGAGGTAAA GGAGTTAGCG GGTAGCGACG CTGCGACAGA TAGCGCAGCG CAAGAAGAGC ATGCGCAACA GGAAACCGAG GCGCCACCTG CTTACTATGT TGAAGAAGAT GAAGACGACG ATGAAGACGA TCGCGTATTA AAAGAAATTT TTTCTTCTGA AGCACGCTCG CATCTAGCCA CTATTCAACA GTTTGTGGAC GAAATGGAAG CTGCGGCACC CATTTATACT CCACCTACCG ATAGCCTACA GCGCGCACTG CACACCTTAA AAGGCAGTGC CAAAATGGCG CAGGTAACGC TTATTGCAGA AATGGCTGAG CCTTTAGAAA ACTTTGCTAA AGAGCTTATT ACCTATCAAG TACCTATTAC CGACGATATT TTACAGCTGA TAAAAGATGC CGGCTCTTAC ACCGCGGGCG CAATCGAAGC GGTTGAAAAT GGTCGTGAAA TAGAAGTTTC TAAATTGCCG CAGTTCCTTG CGCGTGCGTT TGAGTTGCGC GAGATGGCTG TGGGACATTT AATTCGCCTT AAAGAAATGG AGAAGCAAGG GGTAAACAAA GTAGACCCAC GCTTGCTATC TATTTTTATG GCCGAAGAAA TGACTCTGCT TTTAGAAGCT GATCAACTAT TGGCGCAATG GCAAAGCAAC CCAGGTGAAC TCGAGCGCAT CGACGATGTT ATTCGCGAGC TAACCACCCT AGAGCAGGGC GCGCAGCAAG CCAACCTGCC AGATATGGCC AGCTTAAGCC AGCGCTTAAG CACTGTGCAC GGCCATATTA AACAAAACAA TTTACAGTTA GATGAAGGCT TTTTCGAAAC CTTATTAGCC GGGCACAATG CCCTACTCGA TATGGTAGAT GCAGTTGCCG CTGGCCAAAA TATGGTGCCG CCGCAAGAAT ATGTTGTGGC TGCTATAGAA AGTCTTATTC ACAGCGCCGA AGCTAATGCT GCAACTAGAG CTGACGCACC ACAGTTTGAT ACTGAACAAG CCGACGAATT TGGCAGCGAA GAAATTATCA TCGAAGATTT CTCTGAGCTA AATGAGCTGG AAAGCGAAAC AGAAGCCGAA CAACAAAGCG AACTTCAGGG CGAGCAAGCG GAACAACTAA ACCCGCAAGA TTTAAGCGAG CCTACCAGTG AAGAAGCATT CAGCTTTGGC GAAGCGGCAG CTGACGCGAG CAACGAAAGC TTCGACCTGG GTGAGCAAAC AAGCGAGACC GTTGAGTTCG ACAATGCGCA AGAAGAAGCA CCTACTGCGG CTGATCAATC AGATACGCTT GCATTTGCAA TCGATGCTGA AGATGCAGAT GAAATTAGTG CAGGTGACGA CGACTACCTC GATCTTGTTG TCGAGCCTCT GCTCATAGAC GAAGAAGACT CCAACGACTT AGAAATTAAT TTTGATGAAG AGTCATCAGA AGAAATTTCT TTAGAAGATG AAAGTACGTT TGAAGACAAC GCTTTTGATA ACGTTACAGA ATCTCCTACA GAGCAAGCAG AAGAAACCTT TGGTTCGCTC GACAATGCTT TTGATGCGCC CACTGCAGAC GAAACATTTG CCACCCAAGA ATTAACCGAC GAGCATCAAT TGGCCGGTGA ACTGGGTGAG CATATTGATG TTGTTGAGGT TGAAGGTTTA GGTGAGCCCG CAAGCGAGGC GGAGCAAACA GACACCGTTG ACTTTGAATT GCCGCACGGC GAAGAAGCCG AGTTCAAATC AGACGTTGCC GCCGAAGCGA GCGAACAGAC ACAAGCTGAA GAATGCTCTG ATTCTAATGA TTCAGATAGT AGTGGTTCAG ATGTTAGCGA TTCAGAATTT AATGAATCTG ATTTTGATGA ATTACCAGAG CCGCCACTCG AACCGCAGGA GCCAGTAGCA CCTGTAGCTG CAGAGTCTAC TCAGCCGTCG CACCCTGTTG CCGAAGGTAT GGCAACAATT GATGGCTTGC TCGATAGCAT TGATATACAA GACCCAGACT ACGATGAGGA TATTGTCGAA GTATTCCTAG AAGAGGCCGA TGAGCTTTGT GAAGAGCTAG ACGAAGCCAT TCACACCTGG GAATCCGACT GGTCGAATGC CGAGCCTTCA GAAATTATTA AACGTGCCCT GCACACCCTG AAAGGTGGTG CGCGTTTGTC TGGCATGAAT AATTTAGGTG AGCTTACCCA CGAATACGAA AGCTACATAA TCGGTACCGA TTTCGATTCT ACCGATGAAG CTTTCTTCGC ACAGTTACAC AGCTACCAAG ATAAAGTACT GCGTGGCGTG CGTGCGTTGC ACCAATTTAT GCGCGGCGAT GCAGCGCAGG TGGTGGCATC CGAAGAGCCA ACCTTAGGTG ATGTAGAGCT AGTCGAAGAA GACGAAGCTG GTATCGCCAT GGTGAAACAG GCGCAAACAA GTGAAGCACC TGCTACCAAC GACGGCGAGC CGGGCAGCAG TAATGTTGTA CCTTTTGCAC CAAAAACTAA AGATGAATCG GGCTTTATTC CAACCAGACC CAAAGAAGAA GATTCTGGTT TTGTAATGCC TCACGCGAGC GGTGGTGCAC AAGCTGCGCC GCAGGTTGCA ATGAAACGCA GCGGGCCGCA AGAAGTTGTA AAAGTACCTG CAGACCTACT TGAAGAACTG GTAAACCTCG CAGGTGAGAC TTCGATTAGC CGCGGCCGAC TAGAGCAACA GGTAAACGAC TTTGGTGGTG CACTCGAAGA AATCGACGGT ACTATTCACC GCTTGCAAGA ACAGCTGCGC CGTTTAGATA TTGAAACAGA AGCGCAAATT ATTTTCCGGC AGGAGCAGAT TGCAGAATCT GATCGCAACT TCGATCCGCT GGAAATGGAC CGCTATTCAC AATTGCAGCA GTTGTCGCGA TCGCTTATCG AATCCGCTTC GGATTTGGCC GATTTGCGCT CAACGCTTAC CGACAAAGTG CGCGATACAG AAACCCTATT GCTGCAACAG TCGCGTATTA ACTCAACACT ACAAGAAGGC CTCATGCGCT CACGCATGGT GCCATTCTCG CGCCTTGTAC CGCGCTTGCG CCGTATTGTG CGTCAAGTAT CTAGCGAATT AGGTAAGAGT GTTACCTTCG AGTTAGACAA CATAGAAGGT GAATTGGATC GGTCTGTATT GGAGCGCATG GTAGCGCCGC TAGAGCACAT GTTGCGCAAC GCGGTGGACC ATGGTATTGA AATGCCAGAT GTACGCGCGA ATGCTGGTAA ATCTGAAACC GGCCGCATTG TACTTACCCT TGGCCGCGAA GGGGGCGATG TAACCCTGCG CTTGGCCGAT GATGGCCGCG GTATCGATTT AAAACGCGTG CGTGAAAAAG CGATTGAGCG CGGCTTAATG GTGGATGATG CCACCCTAAG TGATCGCGAT ATTATGCAGT TTATTTTGCA TGCTGGTTTC AGTACTGCAG AAAGCGTGAC CCAAATTTCT GGTCGCGGTG TGGGCATGGA TGTTGTTCAC GCAGAAATTA AACAGCTGGG TGGTTCGGTT TCTATTAACT CCGAATGGGG TAAGGGTACC GAGTTCCTTG TGCGCTTGCC ATTTACCGTA TCGGTAAACC GCGCATTAAT GGTTGCCTTG GGGTCGGATT ACTTTGCCGT ACCACTTAAC AATATTGAAG GTATTGTGCG TGTAAGCCCA TTCGAGCTAG AGCACTATTA CCAAAACCCC GAAGCGCGTT TCGAATACGC CGGCGAAAAT TACCAAGTGC GTTACTTGGG CAGCATGTTA ATTGATGGCA TGCGGGCGAA GCTTGATGGG CAATCGCTAC CTCTGCCTGT GTTATTAGTG CGCTCTGCCG AGCACACCAT GGCACTGCAA GTAGATACGC TATTAGGTAG CCGCGAGATT GTGGTAAAAA GCTTAGGGCA GCAATTTAGT ACGGTACAGG GCTTGTCGGG CGCCACAGTA ATGGGTGACG GTAGCGTTGT AGTTATTCTC GACCCACACG CACTTGTGCG TAAAGAAATG GCGTTGGCTA CGGCCGCTAT TGCAATGACC GGCCACGAGC CAGTGCAAGA GAAAGAGCGC GAAGTACAAA CGGTTATGGT AGTGGATGAC TCCGTAACAG TACGTAAAGT AACGACCCGT TTCTTAGAGC GCGAAGGCTT TAACGTTATA ACTGCAAAAG ACGGCGTGGA TGCCTTGCGC GTACTGCAAG ATGAAATACC CGATGTGATG TTGCTAGATA TCGAAATGCC GCGCATGGAT GGCTTCGAAG TGGCGAAAAA TATTCGCAGC TCACAACGCT GGCGCGATAT CCCCATTATT ATGATTACAT CACGTACCGG GGATAAACAC AGAGAGCACG CCTTAAGCTT GGGTGTTAAC AAGTATCTCG GTAAGCCATA TCAAGAAGAC GTACTGCTCG AAAGTATTGT TGAATTGATT GGCGGGGACG ACAACCAATA G
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Protein sequence | MGDKRNFAAL EWVIGEISDT LKDARQALEA YVEDPKDSTR MRFCLTHIHQ VHGSLQMVEF HGASLLAEEM EHTAQAIINN DVASAPEAQE VLMRSMLQLP IYLDHVKIHK EDHPGVVLPL LNDLRAVRKQ SFLSETNLFS PDMSAAERKS VKPHPVTQDA AKLTQVLKKL REMYQFSAAS VLRGIKIDEN LTYIDKVMGR LELLTRGTTC HATWDISAAL VDALRRDDLE LSVAVRGLLR FLARELRILG EKAPQSLARK PPVNLLKNLL YYVGKADAGS ERVARIRAEY KLDTAEFDSG YGGVRSDGDG LNAPDPEAIR SVVVALQEEL NTVKHILDIC LTGQGNPEGL AEVLPVVKRV GDTLAVLGIG DLRKQIVEQA DVLEKMSQQN SLDEDELMQV ATRVIDVEHK LDAISKVVGK SRDINDINER EIEIDQAKAT VINECRHGLE KAKDAIVEYI SSKWDVAQLE NIGGLLHDIR GGLDMIPLPR PAAIMDACNR YIQEALLSGE TQPSWKALDA LADAMASVEF YLERLSVDLD GDADQFLDIA EESVASLGFA VTSRPVVPSQ VIETETPVAE GSFAADTQAD AVRDQSGQEA SSQAESAQQE QPAESFDQGA EAAYEAQEPE DNTLDSAFAN LPQVEIDEPQ ESVENEASDV SAVSDESTAD YSEQPSSDNA FGQQDTASYE APQTEPAGAS VEEQQPAQDP ADAPISLDMI SVDDEPVAEE ESDIDEEIIE IFIEEAGEVL ETLEEYFPKW RADPTDNDSL VIVRRAFHTL KGSGRMVEAY DVGELAWSVE NMLNRIIDKT VPYTAAHGNF IQLVLELTPT LVEAFKNRTA NPQKALTETY MGYGAALAEG SIPDEVKELA GSDAATDSAA QEEHAQQETE APPAYYVEED EDDDEDDRVL KEIFSSEARS HLATIQQFVD EMEAAAPIYT PPTDSLQRAL HTLKGSAKMA QVTLIAEMAE PLENFAKELI TYQVPITDDI LQLIKDAGSY TAGAIEAVEN GREIEVSKLP QFLARAFELR EMAVGHLIRL KEMEKQGVNK VDPRLLSIFM AEEMTLLLEA DQLLAQWQSN PGELERIDDV IRELTTLEQG AQQANLPDMA SLSQRLSTVH GHIKQNNLQL DEGFFETLLA GHNALLDMVD AVAAGQNMVP PQEYVVAAIE SLIHSAEANA ATRADAPQFD TEQADEFGSE EIIIEDFSEL NELESETEAE QQSELQGEQA EQLNPQDLSE PTSEEAFSFG EAAADASNES FDLGEQTSET VEFDNAQEEA PTAADQSDTL AFAIDAEDAD EISAGDDDYL DLVVEPLLID EEDSNDLEIN FDEESSEEIS LEDESTFEDN AFDNVTESPT EQAEETFGSL DNAFDAPTAD ETFATQELTD EHQLAGELGE HIDVVEVEGL GEPASEAEQT DTVDFELPHG EEAEFKSDVA AEASEQTQAE ECSDSNDSDS SGSDVSDSEF NESDFDELPE PPLEPQEPVA PVAAESTQPS HPVAEGMATI DGLLDSIDIQ DPDYDEDIVE VFLEEADELC EELDEAIHTW ESDWSNAEPS EIIKRALHTL KGGARLSGMN NLGELTHEYE SYIIGTDFDS TDEAFFAQLH SYQDKVLRGV RALHQFMRGD AAQVVASEEP TLGDVELVEE DEAGIAMVKQ AQTSEAPATN DGEPGSSNVV PFAPKTKDES GFIPTRPKEE DSGFVMPHAS GGAQAAPQVA MKRSGPQEVV KVPADLLEEL VNLAGETSIS RGRLEQQVND FGGALEEIDG TIHRLQEQLR RLDIETEAQI IFRQEQIAES DRNFDPLEMD RYSQLQQLSR SLIESASDLA DLRSTLTDKV RDTETLLLQQ SRINSTLQEG LMRSRMVPFS RLVPRLRRIV RQVSSELGKS VTFELDNIEG ELDRSVLERM VAPLEHMLRN AVDHGIEMPD VRANAGKSET GRIVLTLGRE GGDVTLRLAD DGRGIDLKRV REKAIERGLM VDDATLSDRD IMQFILHAGF STAESVTQIS GRGVGMDVVH AEIKQLGGSV SINSEWGKGT EFLVRLPFTV SVNRALMVAL GSDYFAVPLN NIEGIVRVSP FELEHYYQNP EARFEYAGEN YQVRYLGSML IDGMRAKLDG QSLPLPVLLV RSAEHTMALQ VDTLLGSREI VVKSLGQQFS TVQGLSGATV MGDGSVVVIL DPHALVRKEM ALATAAIAMT GHEPVQEKER EVQTVMVVDD SVTVRKVTTR FLEREGFNVI TAKDGVDALR VLQDEIPDVM LLDIEMPRMD GFEVAKNIRS SQRWRDIPII MITSRTGDKH REHALSLGVN KYLGKPYQED VLLESIVELI GGDDNQ
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