Gene Sde_3629 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3629 
Symbol 
ID3966586 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp4601147 
End bp4608157 
Gene Length7011 bp 
Protein Length2336 aa 
Translation table11 
GC content49% 
IMG OID637922726 
Productputative CheA signal transduction histidine kinases 
Protein accessionYP_529096 
Protein GI90023269 
COG category[K] Transcription
[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0643] Chemotaxis protein histidine kinase and related kinases
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGAGATA AACGAAATTT CGCAGCGTTA GAATGGGTTA TTGGAGAAAT CTCCGATACC 
CTTAAAGACG CTCGACAAGC GCTTGAAGCC TACGTCGAAG ATCCAAAAGA TTCGACGCGG
ATGCGCTTTT GCCTGACCCA TATTCACCAA GTGCATGGCA GCTTGCAGAT GGTGGAGTTT
CACGGCGCCT CACTGTTAGC CGAGGAAATG GAGCACACTG CACAGGCCAT TATTAATAAC
GATGTAGCCA GCGCCCCTGA AGCACAAGAA GTGCTTATGC GCTCTATGTT GCAGCTTCCT
ATTTATCTCG ATCACGTAAA AATACACAAA GAAGATCACC CAGGTGTTGT GCTGCCTTTG
CTGAACGATC TTCGCGCGGT GCGCAAACAA AGCTTCTTAA GCGAGACCAA CTTATTCTCG
CCAGATATGA GCGCCGCCGA GCGCAAATCT GTAAAACCGC ACCCTGTTAC TCAAGATGCA
GCCAAGCTTA CTCAAGTGCT TAAAAAACTG CGGGAAATGT ACCAGTTTTC TGCAGCCAGT
GTATTGCGCG GCATAAAAAT AGACGAAAAC CTCACTTACA TAGATAAAGT GATGGGCCGT
TTAGAGTTGT TAACTCGCGG CACAACCTGT CACGCAACGT GGGATATTTC CGCTGCGCTA
GTGGATGCGC TGCGTCGCGA CGATTTAGAG CTAAGCGTTG CTGTGCGCGG CCTATTGCGC
TTTTTGGCGC GAGAGCTGCG TATTTTAGGT GAAAAAGCGC CGCAATCTTT AGCGCGCAAG
CCACCGGTTA ACCTACTTAA AAATTTACTT TACTACGTTG GCAAAGCCGA CGCAGGCAGC
GAGCGCGTTG CGCGCATTCG CGCAGAATAT AAATTAGATA CCGCCGAATT CGACTCGGGT
TATGGCGGCG TGCGCAGCGA CGGCGATGGC TTAAATGCGC CAGACCCAGA AGCCATCCGC
TCGGTTGTGG TTGCACTGCA AGAAGAACTT AACACCGTAA AACATATCCT CGATATCTGC
CTCACCGGTC AAGGTAACCC AGAAGGTTTG GCCGAAGTAT TGCCCGTTGT TAAACGCGTT
GGCGATACGC TTGCAGTATT AGGCATTGGC GATTTACGCA AGCAAATAGT CGAGCAGGCT
GATGTGCTCG AAAAAATGTC TCAGCAAAAC AGCTTAGACG AAGACGAATT AATGCAAGTT
GCCACTCGCG TAATAGATGT AGAGCACAAG CTCGATGCTA TTTCGAAAGT GGTGGGCAAA
AGCCGTGATA TTAACGATAT CAACGAGCGC GAAATCGAAA TCGACCAAGC TAAGGCAACC
GTTATTAACG AGTGTCGCCA CGGCTTAGAA AAAGCGAAAG ACGCAATTGT CGAATACATC
TCGTCTAAGT GGGATGTAGC CCAGCTCGAA AATATTGGTG GCTTGCTACA CGATATTCGC
GGCGGCTTAG ATATGATTCC TCTGCCGCGC CCAGCAGCAA TCATGGATGC CTGTAATCGT
TACATCCAAG AAGCACTGTT AAGCGGCGAA ACACAACCTA GCTGGAAAGC GCTTGATGCA
CTGGCCGACG CTATGGCGAG TGTGGAGTTT TATCTCGAGC GCTTATCGGT AGATTTAGAC
GGCGATGCCG ATCAATTTTT AGATATAGCA GAAGAAAGTG TTGCATCACT TGGCTTTGCT
GTAACGTCAC GCCCTGTAGT GCCATCTCAA GTTATCGAAA CTGAAACGCC TGTTGCCGAA
GGTAGCTTTG CGGCCGATAC GCAGGCAGAC GCAGTGCGAG ATCAGAGCGG GCAAGAAGCA
AGTTCGCAAG CAGAGAGCGC GCAGCAAGAA CAGCCTGCAG AAAGCTTCGA CCAAGGCGCA
GAAGCTGCTT ATGAAGCACA AGAGCCTGAA GACAACACCT TAGACTCTGC ATTTGCCAAC
CTGCCACAGG TCGAAATAGA CGAGCCGCAA GAGTCTGTTG AAAACGAAGC TAGCGATGTA
AGTGCCGTAA GCGACGAAAG CACAGCAGAC TATAGCGAGC AACCAAGCAG CGATAATGCC
TTTGGCCAAC AAGATACCGC TAGCTACGAA GCGCCTCAAA CCGAGCCGGC AGGCGCGAGT
GTAGAAGAGC AGCAACCTGC ACAAGACCCA GCGGATGCGC CAATTTCATT AGATATGATC
TCTGTAGACG ACGAGCCTGT CGCCGAAGAA GAGAGTGACA TCGATGAAGA AATTATCGAA
ATTTTTATCG AAGAAGCGGG CGAAGTTTTA GAAACATTAG AAGAGTACTT CCCCAAGTGG
CGTGCCGACC CTACCGATAA CGACTCACTG GTTATTGTTC GCCGTGCCTT CCACACCCTC
AAGGGCAGTG GTCGCATGGT AGAAGCCTAC GATGTAGGTG AATTGGCTTG GTCGGTAGAA
AATATGCTTA ACCGCATTAT CGACAAAACC GTTCCCTATA CTGCAGCGCA CGGCAATTTT
ATTCAGCTGG TGCTCGAGCT AACACCAACG CTGGTAGAAG CATTTAAAAA CCGCACCGCC
AACCCACAAA AAGCGCTTAC CGAAACCTAT ATGGGGTACG GGGCAGCCTT AGCCGAGGGG
AGTATCCCCG ACGAGGTAAA GGAGTTAGCG GGTAGCGACG CTGCGACAGA TAGCGCAGCG
CAAGAAGAGC ATGCGCAACA GGAAACCGAG GCGCCACCTG CTTACTATGT TGAAGAAGAT
GAAGACGACG ATGAAGACGA TCGCGTATTA AAAGAAATTT TTTCTTCTGA AGCACGCTCG
CATCTAGCCA CTATTCAACA GTTTGTGGAC GAAATGGAAG CTGCGGCACC CATTTATACT
CCACCTACCG ATAGCCTACA GCGCGCACTG CACACCTTAA AAGGCAGTGC CAAAATGGCG
CAGGTAACGC TTATTGCAGA AATGGCTGAG CCTTTAGAAA ACTTTGCTAA AGAGCTTATT
ACCTATCAAG TACCTATTAC CGACGATATT TTACAGCTGA TAAAAGATGC CGGCTCTTAC
ACCGCGGGCG CAATCGAAGC GGTTGAAAAT GGTCGTGAAA TAGAAGTTTC TAAATTGCCG
CAGTTCCTTG CGCGTGCGTT TGAGTTGCGC GAGATGGCTG TGGGACATTT AATTCGCCTT
AAAGAAATGG AGAAGCAAGG GGTAAACAAA GTAGACCCAC GCTTGCTATC TATTTTTATG
GCCGAAGAAA TGACTCTGCT TTTAGAAGCT GATCAACTAT TGGCGCAATG GCAAAGCAAC
CCAGGTGAAC TCGAGCGCAT CGACGATGTT ATTCGCGAGC TAACCACCCT AGAGCAGGGC
GCGCAGCAAG CCAACCTGCC AGATATGGCC AGCTTAAGCC AGCGCTTAAG CACTGTGCAC
GGCCATATTA AACAAAACAA TTTACAGTTA GATGAAGGCT TTTTCGAAAC CTTATTAGCC
GGGCACAATG CCCTACTCGA TATGGTAGAT GCAGTTGCCG CTGGCCAAAA TATGGTGCCG
CCGCAAGAAT ATGTTGTGGC TGCTATAGAA AGTCTTATTC ACAGCGCCGA AGCTAATGCT
GCAACTAGAG CTGACGCACC ACAGTTTGAT ACTGAACAAG CCGACGAATT TGGCAGCGAA
GAAATTATCA TCGAAGATTT CTCTGAGCTA AATGAGCTGG AAAGCGAAAC AGAAGCCGAA
CAACAAAGCG AACTTCAGGG CGAGCAAGCG GAACAACTAA ACCCGCAAGA TTTAAGCGAG
CCTACCAGTG AAGAAGCATT CAGCTTTGGC GAAGCGGCAG CTGACGCGAG CAACGAAAGC
TTCGACCTGG GTGAGCAAAC AAGCGAGACC GTTGAGTTCG ACAATGCGCA AGAAGAAGCA
CCTACTGCGG CTGATCAATC AGATACGCTT GCATTTGCAA TCGATGCTGA AGATGCAGAT
GAAATTAGTG CAGGTGACGA CGACTACCTC GATCTTGTTG TCGAGCCTCT GCTCATAGAC
GAAGAAGACT CCAACGACTT AGAAATTAAT TTTGATGAAG AGTCATCAGA AGAAATTTCT
TTAGAAGATG AAAGTACGTT TGAAGACAAC GCTTTTGATA ACGTTACAGA ATCTCCTACA
GAGCAAGCAG AAGAAACCTT TGGTTCGCTC GACAATGCTT TTGATGCGCC CACTGCAGAC
GAAACATTTG CCACCCAAGA ATTAACCGAC GAGCATCAAT TGGCCGGTGA ACTGGGTGAG
CATATTGATG TTGTTGAGGT TGAAGGTTTA GGTGAGCCCG CAAGCGAGGC GGAGCAAACA
GACACCGTTG ACTTTGAATT GCCGCACGGC GAAGAAGCCG AGTTCAAATC AGACGTTGCC
GCCGAAGCGA GCGAACAGAC ACAAGCTGAA GAATGCTCTG ATTCTAATGA TTCAGATAGT
AGTGGTTCAG ATGTTAGCGA TTCAGAATTT AATGAATCTG ATTTTGATGA ATTACCAGAG
CCGCCACTCG AACCGCAGGA GCCAGTAGCA CCTGTAGCTG CAGAGTCTAC TCAGCCGTCG
CACCCTGTTG CCGAAGGTAT GGCAACAATT GATGGCTTGC TCGATAGCAT TGATATACAA
GACCCAGACT ACGATGAGGA TATTGTCGAA GTATTCCTAG AAGAGGCCGA TGAGCTTTGT
GAAGAGCTAG ACGAAGCCAT TCACACCTGG GAATCCGACT GGTCGAATGC CGAGCCTTCA
GAAATTATTA AACGTGCCCT GCACACCCTG AAAGGTGGTG CGCGTTTGTC TGGCATGAAT
AATTTAGGTG AGCTTACCCA CGAATACGAA AGCTACATAA TCGGTACCGA TTTCGATTCT
ACCGATGAAG CTTTCTTCGC ACAGTTACAC AGCTACCAAG ATAAAGTACT GCGTGGCGTG
CGTGCGTTGC ACCAATTTAT GCGCGGCGAT GCAGCGCAGG TGGTGGCATC CGAAGAGCCA
ACCTTAGGTG ATGTAGAGCT AGTCGAAGAA GACGAAGCTG GTATCGCCAT GGTGAAACAG
GCGCAAACAA GTGAAGCACC TGCTACCAAC GACGGCGAGC CGGGCAGCAG TAATGTTGTA
CCTTTTGCAC CAAAAACTAA AGATGAATCG GGCTTTATTC CAACCAGACC CAAAGAAGAA
GATTCTGGTT TTGTAATGCC TCACGCGAGC GGTGGTGCAC AAGCTGCGCC GCAGGTTGCA
ATGAAACGCA GCGGGCCGCA AGAAGTTGTA AAAGTACCTG CAGACCTACT TGAAGAACTG
GTAAACCTCG CAGGTGAGAC TTCGATTAGC CGCGGCCGAC TAGAGCAACA GGTAAACGAC
TTTGGTGGTG CACTCGAAGA AATCGACGGT ACTATTCACC GCTTGCAAGA ACAGCTGCGC
CGTTTAGATA TTGAAACAGA AGCGCAAATT ATTTTCCGGC AGGAGCAGAT TGCAGAATCT
GATCGCAACT TCGATCCGCT GGAAATGGAC CGCTATTCAC AATTGCAGCA GTTGTCGCGA
TCGCTTATCG AATCCGCTTC GGATTTGGCC GATTTGCGCT CAACGCTTAC CGACAAAGTG
CGCGATACAG AAACCCTATT GCTGCAACAG TCGCGTATTA ACTCAACACT ACAAGAAGGC
CTCATGCGCT CACGCATGGT GCCATTCTCG CGCCTTGTAC CGCGCTTGCG CCGTATTGTG
CGTCAAGTAT CTAGCGAATT AGGTAAGAGT GTTACCTTCG AGTTAGACAA CATAGAAGGT
GAATTGGATC GGTCTGTATT GGAGCGCATG GTAGCGCCGC TAGAGCACAT GTTGCGCAAC
GCGGTGGACC ATGGTATTGA AATGCCAGAT GTACGCGCGA ATGCTGGTAA ATCTGAAACC
GGCCGCATTG TACTTACCCT TGGCCGCGAA GGGGGCGATG TAACCCTGCG CTTGGCCGAT
GATGGCCGCG GTATCGATTT AAAACGCGTG CGTGAAAAAG CGATTGAGCG CGGCTTAATG
GTGGATGATG CCACCCTAAG TGATCGCGAT ATTATGCAGT TTATTTTGCA TGCTGGTTTC
AGTACTGCAG AAAGCGTGAC CCAAATTTCT GGTCGCGGTG TGGGCATGGA TGTTGTTCAC
GCAGAAATTA AACAGCTGGG TGGTTCGGTT TCTATTAACT CCGAATGGGG TAAGGGTACC
GAGTTCCTTG TGCGCTTGCC ATTTACCGTA TCGGTAAACC GCGCATTAAT GGTTGCCTTG
GGGTCGGATT ACTTTGCCGT ACCACTTAAC AATATTGAAG GTATTGTGCG TGTAAGCCCA
TTCGAGCTAG AGCACTATTA CCAAAACCCC GAAGCGCGTT TCGAATACGC CGGCGAAAAT
TACCAAGTGC GTTACTTGGG CAGCATGTTA ATTGATGGCA TGCGGGCGAA GCTTGATGGG
CAATCGCTAC CTCTGCCTGT GTTATTAGTG CGCTCTGCCG AGCACACCAT GGCACTGCAA
GTAGATACGC TATTAGGTAG CCGCGAGATT GTGGTAAAAA GCTTAGGGCA GCAATTTAGT
ACGGTACAGG GCTTGTCGGG CGCCACAGTA ATGGGTGACG GTAGCGTTGT AGTTATTCTC
GACCCACACG CACTTGTGCG TAAAGAAATG GCGTTGGCTA CGGCCGCTAT TGCAATGACC
GGCCACGAGC CAGTGCAAGA GAAAGAGCGC GAAGTACAAA CGGTTATGGT AGTGGATGAC
TCCGTAACAG TACGTAAAGT AACGACCCGT TTCTTAGAGC GCGAAGGCTT TAACGTTATA
ACTGCAAAAG ACGGCGTGGA TGCCTTGCGC GTACTGCAAG ATGAAATACC CGATGTGATG
TTGCTAGATA TCGAAATGCC GCGCATGGAT GGCTTCGAAG TGGCGAAAAA TATTCGCAGC
TCACAACGCT GGCGCGATAT CCCCATTATT ATGATTACAT CACGTACCGG GGATAAACAC
AGAGAGCACG CCTTAAGCTT GGGTGTTAAC AAGTATCTCG GTAAGCCATA TCAAGAAGAC
GTACTGCTCG AAAGTATTGT TGAATTGATT GGCGGGGACG ACAACCAATA G
 
Protein sequence
MGDKRNFAAL EWVIGEISDT LKDARQALEA YVEDPKDSTR MRFCLTHIHQ VHGSLQMVEF 
HGASLLAEEM EHTAQAIINN DVASAPEAQE VLMRSMLQLP IYLDHVKIHK EDHPGVVLPL
LNDLRAVRKQ SFLSETNLFS PDMSAAERKS VKPHPVTQDA AKLTQVLKKL REMYQFSAAS
VLRGIKIDEN LTYIDKVMGR LELLTRGTTC HATWDISAAL VDALRRDDLE LSVAVRGLLR
FLARELRILG EKAPQSLARK PPVNLLKNLL YYVGKADAGS ERVARIRAEY KLDTAEFDSG
YGGVRSDGDG LNAPDPEAIR SVVVALQEEL NTVKHILDIC LTGQGNPEGL AEVLPVVKRV
GDTLAVLGIG DLRKQIVEQA DVLEKMSQQN SLDEDELMQV ATRVIDVEHK LDAISKVVGK
SRDINDINER EIEIDQAKAT VINECRHGLE KAKDAIVEYI SSKWDVAQLE NIGGLLHDIR
GGLDMIPLPR PAAIMDACNR YIQEALLSGE TQPSWKALDA LADAMASVEF YLERLSVDLD
GDADQFLDIA EESVASLGFA VTSRPVVPSQ VIETETPVAE GSFAADTQAD AVRDQSGQEA
SSQAESAQQE QPAESFDQGA EAAYEAQEPE DNTLDSAFAN LPQVEIDEPQ ESVENEASDV
SAVSDESTAD YSEQPSSDNA FGQQDTASYE APQTEPAGAS VEEQQPAQDP ADAPISLDMI
SVDDEPVAEE ESDIDEEIIE IFIEEAGEVL ETLEEYFPKW RADPTDNDSL VIVRRAFHTL
KGSGRMVEAY DVGELAWSVE NMLNRIIDKT VPYTAAHGNF IQLVLELTPT LVEAFKNRTA
NPQKALTETY MGYGAALAEG SIPDEVKELA GSDAATDSAA QEEHAQQETE APPAYYVEED
EDDDEDDRVL KEIFSSEARS HLATIQQFVD EMEAAAPIYT PPTDSLQRAL HTLKGSAKMA
QVTLIAEMAE PLENFAKELI TYQVPITDDI LQLIKDAGSY TAGAIEAVEN GREIEVSKLP
QFLARAFELR EMAVGHLIRL KEMEKQGVNK VDPRLLSIFM AEEMTLLLEA DQLLAQWQSN
PGELERIDDV IRELTTLEQG AQQANLPDMA SLSQRLSTVH GHIKQNNLQL DEGFFETLLA
GHNALLDMVD AVAAGQNMVP PQEYVVAAIE SLIHSAEANA ATRADAPQFD TEQADEFGSE
EIIIEDFSEL NELESETEAE QQSELQGEQA EQLNPQDLSE PTSEEAFSFG EAAADASNES
FDLGEQTSET VEFDNAQEEA PTAADQSDTL AFAIDAEDAD EISAGDDDYL DLVVEPLLID
EEDSNDLEIN FDEESSEEIS LEDESTFEDN AFDNVTESPT EQAEETFGSL DNAFDAPTAD
ETFATQELTD EHQLAGELGE HIDVVEVEGL GEPASEAEQT DTVDFELPHG EEAEFKSDVA
AEASEQTQAE ECSDSNDSDS SGSDVSDSEF NESDFDELPE PPLEPQEPVA PVAAESTQPS
HPVAEGMATI DGLLDSIDIQ DPDYDEDIVE VFLEEADELC EELDEAIHTW ESDWSNAEPS
EIIKRALHTL KGGARLSGMN NLGELTHEYE SYIIGTDFDS TDEAFFAQLH SYQDKVLRGV
RALHQFMRGD AAQVVASEEP TLGDVELVEE DEAGIAMVKQ AQTSEAPATN DGEPGSSNVV
PFAPKTKDES GFIPTRPKEE DSGFVMPHAS GGAQAAPQVA MKRSGPQEVV KVPADLLEEL
VNLAGETSIS RGRLEQQVND FGGALEEIDG TIHRLQEQLR RLDIETEAQI IFRQEQIAES
DRNFDPLEMD RYSQLQQLSR SLIESASDLA DLRSTLTDKV RDTETLLLQQ SRINSTLQEG
LMRSRMVPFS RLVPRLRRIV RQVSSELGKS VTFELDNIEG ELDRSVLERM VAPLEHMLRN
AVDHGIEMPD VRANAGKSET GRIVLTLGRE GGDVTLRLAD DGRGIDLKRV REKAIERGLM
VDDATLSDRD IMQFILHAGF STAESVTQIS GRGVGMDVVH AEIKQLGGSV SINSEWGKGT
EFLVRLPFTV SVNRALMVAL GSDYFAVPLN NIEGIVRVSP FELEHYYQNP EARFEYAGEN
YQVRYLGSML IDGMRAKLDG QSLPLPVLLV RSAEHTMALQ VDTLLGSREI VVKSLGQQFS
TVQGLSGATV MGDGSVVVIL DPHALVRKEM ALATAAIAMT GHEPVQEKER EVQTVMVVDD
SVTVRKVTTR FLEREGFNVI TAKDGVDALR VLQDEIPDVM LLDIEMPRMD GFEVAKNIRS
SQRWRDIPII MITSRTGDKH REHALSLGVN KYLGKPYQED VLLESIVELI GGDDNQ