| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3607 |
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| Symbol | |
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| ID | 3966564 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4571117 |
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| End bp | 4573219 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637922704 |
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| Product | pilus retraction protein PilT |
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| Protein accession | YP_529074 |
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| Protein GI | 90023247 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.13786 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000230198 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACTAAAT GGATACTAAT CGTAGCGCTG GCTCTTGGCG GCGTAATTAT ATGGAAGTTT
GCTCCGCTAA CAGGCGGCGG TGCTAGCAAA AGTGACTTGC TTGCCACAGT GCCCGCAGAT
ACCGCGTTTT ATGTAGGCGG CAATAGCAGT GAAGAGCTCG CAGAGTTTAT GCGGGATTAC
AGTATTATTC CCACCACGCC AACTCAAATG GCTCAATGGG CAAAAATGCT AGAAGAAATA
AGCGGCAGTG AAACCCCAGC TGCGCAATTC TTTGCATCTT TGCAGCGTCA AATTGCGGCT
ACCGAAGGCA GTACTTTAAC CGCATTAGAG AAAACCGGTG GCATTTCCAA CACGGGTAAC
TATGCATTGT ATTTGCACGG TGCGGTACCC GTAGCACGCT TAACCCTAAG CGACCCAGCA
GCCTTCGATG CAATGATCGA AAAAGCGGTT GCCGACAGTA ACTTCACCTA CAACAAAGCA
ACGATAGGCG CTGCCGAAGC GCGCGTATGG CGCATTACAG ATGCCGACGA AGCGTTACAA
GTTGATTTGG CTGTAGCGGT AGCAGGCAGC GATTTAGCCA TTACCTTTTT TATTGGCGCG
GATGATGAAG CCACTAAAAA AGAACGCATA GGCCAAAGCA AGCCAGCTAA AAGCCTAGCT
TCATCTGGCG AGATTGCGAA TATTCAAAAA CAGTACGGCT TTAACGATGC CATGGTTACC
TTTGTGCACA TAGAGCGCAT AGTGCAGGGC ATTTTAAAAC CAGAAACCAA TAGTTTTGGC
AAAGATTTAC AACGCTATTT GCCAGAAGAT GCTAAAGCAG GCTTGGCAGC AGATGTGACG
GAAGCTTGTC GTACAGACTA CCTAAGCCTA GCCGCGAGCA TGCCGCGTTT AGTAAGTGGC
TACAGCGCAC TAGAAATAAA AGGCAACACC CTCTACAACG CCGGCGACTT TATTTTAGAG
CTTACTAACG AGTCGGTAAA AACCGAACTG GGTAAAATGC GCGGCCACTT ACCGTTGCAC
ACACTAAATG CTTCCGACAA ATTAATGAGC TTTAGTGCTG GCGTAAATAT GGATCAATTA
GTGCCTGCTG TTACCGCACT ATGGAACCAA TTTACTCAAG CGCCCTATAG CTGTGAAGCA
TTAGTAGAAA TGCAAAACAA AGCCAAAGAA ACCAGCCCAG CAATGCTCGC CATGGCGATG
GGTATGGCGC AAGGCGTTAA AGGCTTAGGC GTTTCGTTTT ACGATTTTAA GATGGACGAA
ATGATGATGC CTAGCTCGCT ATCTTTCTTA GCTAGCGTAG CAACCGAAAA CCCCGGCACA
CTTGCCTCTT TAACCAGCAT GATTCCTGTG CCAGGGCTTA ACGAGCTGGT TATTCCTGCC
GACGGCACCG CAGTACCAGT ACCTGTACCC ATGTTGCCAC CAAGCATAGA AGTTAAAGCA
GCAATAAAAG GCAAACACTT AGTGGTGTAT GCCGGTGCTA AAGCTGAAGC CGAAGTAGCA
AAAATAGAAC AAGAAGCAAT TACGCCAAAT GGACTATACG CGATAGGCTT AAACTACCGC
AGGTTTGGTG AGCTTTTAGA ACTACAAAGC AATGGCATGT TTGCACAGGG CGGCGGCCAA
GGCTGTATTG CCCAACAAGA AATGAAACAC ATGATGCAAA ATTTAAAAAT GGACTTTGCA
GTTTCTTTCG ATGTAAACAA CCAAGGCTTA GTGGGCCATG CAGAAGCATC TATGGATAAA
CCCACCACCA GCACAACAAA ACTACCCGGC AAATACCAAC TCGCTTATTT AGATGGCGCA
TGTAATTGGG AAACCGCAGG AGTGGAAACC ATTAACGCAG ACGGCACAGG CTCGGTAACT
GAAAAGTCTA ACGAAGGCGA ATGCAATACC TACGAAAGCG CCTACACCTG GACACAAGCT
GGCTCTGTAG TGTCTATGAC TGCCACTTCC GACCGCTACC GCGAAAGCTG CGACAGCGAA
TGGGACAACA ACGACCTAAG CACCTACGAA TGCCACATTT TAAATGTAAG CGAAACGGGC
TTTCAGTGCT TATTTGACCC AGGCAGCGAA GATGCCGCTA TATACAGCTA TACGCGTATG
TAG
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| Protein sequence | MTKWILIVAL ALGGVIIWKF APLTGGGASK SDLLATVPAD TAFYVGGNSS EELAEFMRDY
SIIPTTPTQM AQWAKMLEEI SGSETPAAQF FASLQRQIAA TEGSTLTALE KTGGISNTGN
YALYLHGAVP VARLTLSDPA AFDAMIEKAV ADSNFTYNKA TIGAAEARVW RITDADEALQ
VDLAVAVAGS DLAITFFIGA DDEATKKERI GQSKPAKSLA SSGEIANIQK QYGFNDAMVT
FVHIERIVQG ILKPETNSFG KDLQRYLPED AKAGLAADVT EACRTDYLSL AASMPRLVSG
YSALEIKGNT LYNAGDFILE LTNESVKTEL GKMRGHLPLH TLNASDKLMS FSAGVNMDQL
VPAVTALWNQ FTQAPYSCEA LVEMQNKAKE TSPAMLAMAM GMAQGVKGLG VSFYDFKMDE
MMMPSSLSFL ASVATENPGT LASLTSMIPV PGLNELVIPA DGTAVPVPVP MLPPSIEVKA
AIKGKHLVVY AGAKAEAEVA KIEQEAITPN GLYAIGLNYR RFGELLELQS NGMFAQGGGQ
GCIAQQEMKH MMQNLKMDFA VSFDVNNQGL VGHAEASMDK PTTSTTKLPG KYQLAYLDGA
CNWETAGVET INADGTGSVT EKSNEGECNT YESAYTWTQA GSVVSMTATS DRYRESCDSE
WDNNDLSTYE CHILNVSETG FQCLFDPGSE DAAIYSYTRM
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