Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3603 |
Symbol | |
ID | 3966465 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 4563392 |
End bp | 4564777 |
Gene Length | 1386 bp |
Protein Length | 461 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637922700 |
Product | TonB-like |
Protein accession | YP_529070 |
Protein GI | 90023243 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2723] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase |
TIGRFAM ID | [TIGR03356] beta-galactosidase |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.70293 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00573623 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAACCT TTAACCCAGA TTTCGTATGG GGAGCAGCCA GTTCCGCCTA TCAGGTAGAA GGCGCCACCA CCACCGATGG CAGAGGCCCC AGTATTTGGG ATGCGTTCAG TTCCATTCCC GGTAAAACCT ACCACAACCA AAACGCCGAC ATAGCCTGCG ACCACTACAA CCGCTGGCAA GAAGACGTGG CCATAATGAA AGAGATGGGG CTAAAGGCTT ACCGCTTTTC TATTTCTTGG TCGCGCATAT TCCCTACTGG GCGCGGCGAA GTTAACGAAA AAGGCGTAGC CTTTTACAAC AACCTTATCG ACGAATTAAT AAAAAACGAC ATTACCCCTT GGGTAACCCT ATTTCACTGG GACTTTCCTC TGGCACTGCA AATGGAAATG GACGGCCTAC TTAACCCCGC CATCGCCGAC GAATTCGCCA ACTACGCCAA GCTGTGTTTC GCGCGCTTTG GCGACCGCGT TACCCACTGG ATTACCCTAA ACGAACCTTG GTGCAGTGCC ATGCTTGGCC ACGGCATGGG CAGCAAAGCC CCTGGCCGCG TATCTAAGGA TGAACCCTAT ATAGCCGCCC ACAACTTGCT GCGTGCACAC GGCAAAATGG TAGATATTTA CCGGCGCGAA TTTCAGCCCA CACAAAAAGG CATGATAGGC ATAGCCAACA ATTGCGACTG GCGCGAACCC AAAACCGATT CTGAATTAGA TAAAAAAGCA GCCGAGCGCG CCCTAGAATT TTTTGTAAGC TGGTTTGCCG ACCCCATTTA TTTGGGCGAC TACCCAGCCA GCATGCGCGA GCGCTTGGGT GAGCGTTTAC CCACCTTTAG CGACGAAGAC ATTGCGCTAA TAAAAAACTC TAGCGACTTT TTTGGTTTGA ATCACTACAC CACCATGCTT GCCGAACAAA CCCACGAAGG TGACGTTGTT GAAGATACTA TTCGCGGCAA CGGCGGCATA TCGGAAGACC AAATGGTCAC CCTCTCCAAA GACCCAAGCT GGGAACAAAC CGACATGGAG TGGAGCATTG TGCCCTGGGG CTGTAAAAAA TTATTAATCT GGTTAAGCGA GCGCTACAAC TACCCCGACA TTTACATTAC CGAAAACGGC TGCGCCCTAC CCGACGAAGA CGACGTAAAC ATAGCCATTA ACGATACACG CCGCGTAGAT TTTTACCGCG GTTATATCGA TGCGTGTCAC CAAGCAATAG AGGCCGGCGT AAAACTAAAA GGCTATTTTG CATGGACACT TATGGATAAC TACGAATGGG AAGAAGGCTA CACCAAACGC TTTGGCTTAA ACCATGTAGA TTTCACCACA GGCAAACGCA CACCTAAACA GTCTGCAATT TGGTATAGCA CGTTAATTAA AGATGGTGGG TTCTAG
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Protein sequence | MKTFNPDFVW GAASSAYQVE GATTTDGRGP SIWDAFSSIP GKTYHNQNAD IACDHYNRWQ EDVAIMKEMG LKAYRFSISW SRIFPTGRGE VNEKGVAFYN NLIDELIKND ITPWVTLFHW DFPLALQMEM DGLLNPAIAD EFANYAKLCF ARFGDRVTHW ITLNEPWCSA MLGHGMGSKA PGRVSKDEPY IAAHNLLRAH GKMVDIYRRE FQPTQKGMIG IANNCDWREP KTDSELDKKA AERALEFFVS WFADPIYLGD YPASMRERLG ERLPTFSDED IALIKNSSDF FGLNHYTTML AEQTHEGDVV EDTIRGNGGI SEDQMVTLSK DPSWEQTDME WSIVPWGCKK LLIWLSERYN YPDIYITENG CALPDEDDVN IAINDTRRVD FYRGYIDACH QAIEAGVKLK GYFAWTLMDN YEWEEGYTKR FGLNHVDFTT GKRTPKQSAI WYSTLIKDGG F
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