Gene Sde_3591 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3591 
Symbol 
ID3966453 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp4550837 
End bp4551979 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content47% 
IMG OID637922688 
ProductHAD family hydrolase 
Protein accessionYP_529058 
Protein GI90023231 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000000168113 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.23721 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATTTG TTATGTCGAA AAAAATTATT GCCCCGTTGG CTGTGGCTAT AGCGGCTATC 
ACATCAGCGG CGGATGCTGC AGACGTACGT GAAGGTATAG AGTTGGGCGC TGGCATTTCG
CGTTTCTCGT TTGCGGATGA GGAAGTAATG GAAGGTGATT TTGGTGGTAA AGTATTTGCC
GGATACCGCT TCGCCAATCC TTGGAGCATA GAACTTAACT ATGCGCGCGC AACGCCACAA
TTAGATTCTG GCGACGGCAT TAAAATAGCG CAAACTTACG CTAGCGCGTT ATACCACTTT
AAAACCGATG AGAGCTACGA GCCGTATATT TCTGTTGGCG CAGGCCAGCT TACTTTCGAC
GGCATGGGTG TATCTGACGA CAGTAGCTTG GTGGGTGTGG GCGCCGGTAT TAAAGGTTAT
ATTTCCGATC GCATTACCTT CCGCCCAGAC TTTTTTATTG CTAGTGCTCA AGAGCTAGAA
AAACCGCATT TGCTTTCTAG TATTACTTTT AGCTACTTTT TCGGCAATGT GTCTTCATCT
GCTGCGCCAA GTTCAGCTAA AACGGTTGCA GCAGCAAAAA TGGTAGATAG CGATAAAGAC
GGCGTGCAAG ACGGCAACGA TGCCTGCCCA AATACTCCGG CAGGTGTAAA AGTAAATGCT
AAAGGTTGCG CGCTGGATAG CGACCAAGAC GGCGTGGCAG ACCACAAAGA CAGCTGCCCA
AATACAGCTA TGCACTTAAA GGTAGACGCT AAAGGTTGCC CGGTTCAATT GAGCGAATCT
GTTTCTATTG ATTTAAAAGT TAATTTCGAT TCCAACAGCA GTGTTGTTAA GCCAGAATAT
TTTGCTGAAA TCCGCAAAGT AGCCGACTTT ATGGCGCAGT ACGAAAACTC TGTGGTTGTT
ATTGAAGGGC ACACAGATAC ACGCGGTGCC GCAGCTTACA ATAAATCACT TTCTCAAAAA
CGTGCAGATG CAGTTGCTGC CGTTTTGGTA TCGGAAATGA ATGTAGCTAA GCGCAGAGTG
ACATCAGTTG GTTATGGCGA AGAGCAGCCT ATAGCTGACG AAAGCACCCG TGAAGGTTTG
GTGGCTAACC GTCGCGTAGT AGCTAAAGTG TCTGCTAGCG TAACGAAGCT TGAGCAAAAG
TAA
 
Protein sequence
MEFVMSKKII APLAVAIAAI TSAADAADVR EGIELGAGIS RFSFADEEVM EGDFGGKVFA 
GYRFANPWSI ELNYARATPQ LDSGDGIKIA QTYASALYHF KTDESYEPYI SVGAGQLTFD
GMGVSDDSSL VGVGAGIKGY ISDRITFRPD FFIASAQELE KPHLLSSITF SYFFGNVSSS
AAPSSAKTVA AAKMVDSDKD GVQDGNDACP NTPAGVKVNA KGCALDSDQD GVADHKDSCP
NTAMHLKVDA KGCPVQLSES VSIDLKVNFD SNSSVVKPEY FAEIRKVADF MAQYENSVVV
IEGHTDTRGA AAYNKSLSQK RADAVAAVLV SEMNVAKRRV TSVGYGEEQP IADESTREGL
VANRRVVAKV SASVTKLEQK