| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3588 |
|---|
| Symbol | |
|---|
| ID | 3966450 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4547916 |
|---|
| End bp | 4548647 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637922685 |
|---|
| Product | peptidyl-prolyl cis-trans isomerase, FKBP-type |
|---|
| Protein accession | YP_529055 |
|---|
| Protein GI | 90023228 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0545] FKBP-type peptidyl-prolyl cis-trans isomerases 1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000000000438109 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.302689 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC TACCATTGGT TACAGCTATG TGCGCAGTGA TCGCATTGGC TGGGTGCAAC
AAAGAAGAAG CATCCGTTAA AAAAGAATTG GTATTGGAAA CCTCCGAGCA AAAAGTTAGC
TATCTTATTG GCCAAAACTT AGGGTCCAAC ATGGGCCAAG ATAAGTTTGA GTTGGATATG
GATGCAATGG TTGCGGGCTT AGAAGAAGGT CTTGCGGGTA AAGAAAGCCG CATTTCTGAA
GAAGACGCTC GCGCCGTAAT GATGGCTTTC CAAGCCGAGC AACGCGCCAA AATGGAAGCG
GCTCAGCAAG AAGAAGCGCA AAAAACTTTG GCTGAGGCAC AAGCTTTCTT AGCTGAAAAC
GCCACTAAAG AAGGTGTAGT ACAAACCGAA AGCGGCTTAC AGTATAAAGA ATTGAAAGCT
GGCGACGGCG CAACCCCTAC CGCATCTGAC ACGGTTGTGG TTCACTACTC TGGTACGTTA
TTAGACGGTA CCGAATTTGA CAGCTCTCAC AAGCGCGGTA AGCCTGCTGA ATTTATGGTG
GGTGCACTTA TTCCTGGTTG GGTTGAAGCG CTACAGTTGA TGCAAGTGGG CGACGAGTGG
GAACTATATG TACCTGCCGA CTTAGCTTAC GGCCCTGGCG GCACGCCAAA CATTCCTGGC
AACTCTACGT TGATCTTCAA AATGGAATTG TTAGACATCA AAGCTAAAGA GGCTCCTGCT
GAAGCGAAAT AA
|
|---|
| Protein sequence | MKKLPLVTAM CAVIALAGCN KEEASVKKEL VLETSEQKVS YLIGQNLGSN MGQDKFELDM
DAMVAGLEEG LAGKESRISE EDARAVMMAF QAEQRAKMEA AQQEEAQKTL AEAQAFLAEN
ATKEGVVQTE SGLQYKELKA GDGATPTASD TVVVHYSGTL LDGTEFDSSH KRGKPAEFMV
GALIPGWVEA LQLMQVGDEW ELYVPADLAY GPGGTPNIPG NSTLIFKMEL LDIKAKEAPA
EAK
|
|---|
| |