| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3581 |
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| Symbol | |
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| ID | 3966443 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4541255 |
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| End bp | 4542226 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637922678 |
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| Product | general secretion pathway protein C |
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| Protein accession | YP_529048 |
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| Protein GI | 90023221 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3031] Type II secretory pathway, component PulC |
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| TIGRFAM ID | [TIGR01713] general secretion pathway protein C |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.703805 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.317854 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACATCCC GGCAACTAGC CGATAGCCCG TTTTTGCAGA ACGCATCAGA GAAGTTTAAA
ACTTTAGCTG AAACTGTTGC GCGTATGCCT CTCGCGTTAT GGCGCAACTT AGTGCTAGTG
CTCATCTTTA TTTGGATGTG CCACAGTGGC GCGAGCTTAT TTTGGGCGCT TATGCCCACG
CCCGATATCC CGCAACCGGC CGTTATAGCC ACGCCTGCCA GTGTCGATGG CGCTGCAGGT
AGTGCAAATG TCGATGTGGC GGCTATTCAG GCGCAGAATT TATTTGGTAT TGCCGGTGCA
ACTCAGGGGC CTATCAGCCA AGATGTTGCC GCGGCGCCAG TGATTGGCGA AGATATAGAA
ACAACTAAGC TCAACCTTAC CCTTAGCGCC GTGTTGGCTA GTGAAGATAC CAATGCCGCA
CGCGCGGTTA TTGCGGATGG CAATGATCAA TCCCTGTACA GCGTGGGTGA GCAAGTGGGT
AAAAATGCCG GCGTAAAACT GGCTAAAGTG TTAACTGACC GAGTGATATT AGATAATAAA
GGTAATCACG AGGCGTTATG GCTGTATTCA GAAGAAGATT ATAAATCTAC GCCAAAGGCA
ACCTACACCG AGCGCGCACC AGCTTCCGTC CCTATGTCTA GGCAGACTGG CCCAGAAGAG
GGCAAGCAAG TTGTTGTGAA GCAGGACCAA ATTCCTACCT CTATTAACGA TGTTATTCGT
TTTAGTGTGT ACCGCGAAGA CGGCAAAATG TTAGGTTATC GTGTTCGTCC CGGGCGCGAG
CGCGAGTTAT TTGATCAAGT GGGTCTAAAA ATGAACGATA TCGTTACCTC GGTTAACGGT
ATTCGTGTAG ACGACCCCAA ACAGATTCGT ATGGTTTATC AGTCGCTAAA AACTGCGACA
TCAGCGCAAC TTGAAGTTAT GCGCGATGGT GAAACCTCCA TTATTAACAT CAGTTTAGAT
TCAGGTGGTT AA
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| Protein sequence | MTSRQLADSP FLQNASEKFK TLAETVARMP LALWRNLVLV LIFIWMCHSG ASLFWALMPT
PDIPQPAVIA TPASVDGAAG SANVDVAAIQ AQNLFGIAGA TQGPISQDVA AAPVIGEDIE
TTKLNLTLSA VLASEDTNAA RAVIADGNDQ SLYSVGEQVG KNAGVKLAKV LTDRVILDNK
GNHEALWLYS EEDYKSTPKA TYTERAPASV PMSRQTGPEE GKQVVVKQDQ IPTSINDVIR
FSVYREDGKM LGYRVRPGRE RELFDQVGLK MNDIVTSVNG IRVDDPKQIR MVYQSLKTAT
SAQLEVMRDG ETSIINISLD SGG
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