Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3579 |
Symbol | |
ID | 3966441 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 4537735 |
End bp | 4539246 |
Gene Length | 1512 bp |
Protein Length | 503 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637922676 |
Product | glycoside hydrolase family protein |
Protein accession | YP_529046 |
Protein GI | 90023219 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.666057 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGATTGATG TTAACGAAGC AAACGAAATA GTCGAGGTTA CAGAGCAAGA CGAAGTGGTG ATTAGCCGCA CGCGCTTGCC GTTCTCGTTT GCGTCTGAGC ACGGTGTGGT AATAGAAGAC GGTTGTATAT TGCACCGCTC CGATATTTCT GCGCCCATCC TGCTTGAGTT GCGCCGCCAT ATGGGGCGCC CACTTATTTT AAAGCAAGTG GATGAAGCCG AATTCAAATC GAAGCTCACC AAGTTGTATC AAAGTAACGA CGGCGAAGCG CAACAAGCTG TTGACGAAAT GGGTGCAGAG TTTGACCTTA CCCAGCTCGC AGATGATATT TCTGACGATA GTGAATTGTT ATCGGGCGAC GGTGATGCGC CGGTTATTCG CTTAATTAAC GCGGTGTTGT CGCAAGCGGT ACAAGAGCAG GCGTCGGATA TTCACGTCGA GCCCTATGAA GATCGCGTCT CTATTCGCTT CCGCGTGGAT GGTATTCTTA ACGAAGTACT TTCCCCTAAG CCTGTGCTTG CCCCGGTATT GGTATCGCGC TTAAAAGTTA TGGCGCGCTT GGATATTGCC GAAAAACGTA TTCCGCAGGA TGGTCGCATT ACCGTTAAGT TAGCCGGTCA CGCTGTGGAT ATTCGTGTTT CGACTATTCC ATCTGCCCAC GGTGAGCGCG TGGTATTGCG TCTGCTCGAC CAAGCCGCAG GCCAATTGGG CTTACCGCAA TTGCGTATGC CTGAAGATGT ACAAACCAAT TTCGAAAAAG CACTGCGCAA ACCGCACGGT ATTATTTTGG TTACCGGCCC TACGGGTTCG GGTAAAACCA CATCGCTTTA TGCGGGCCTA AGTTATTTGA ATACGCGCTC GCGCAATATT CTTACTATTG AAGACCCAAT CGAGTATTTG TTGGCAGGTA TTGGCCAAAC ACAAGTAAAT ACCAAAGTAG ATATGACCTT CGCACGCGGG CTGCGGGCAA TACTTCGTCA GGATCCCGAT GTAGTCATGA TCGGTGAGAT TCGCGACCAA GAAACCGCGC AAATTGCTGT ACAGGCGAGT TTGACCGGTC ACTTGGTGTT ATCTACCTTG CACACCAACA CCGCAATAGG TGCGGTAATG CGTTTGCAAG ATATGGGCGT AGAGCCCTTT TTGTTGTCAT CCAGTTTAGA AGGCTTGATG GCGCAGCGTT TGGTGCGTTT GTTGTGCTCT AGCTGTAAAG AGCCGCACGA GGCCAGTGCA TCGGAATCTC AGCGCTTGGG CGTGCCCGAG GGCAGTATTG TGTATCGCGC TGTTGGTTGT GATAAGTGCC ATCAAACGGG TTACCGAGGC CGAACCGGTA TTTACGAATT AATTCCAGTA GACGACACAT TGCGTCAACT TATTCACGAA GAAGTGGGTG AGCAGGCTAT GTTAGCCCAT GCGCGTAAAA CCGTGCGCTC TATCGATCAA GACGGTCGAG AAAAAGTGCT GCAGGGTATG ACCAGTGTGG AAGAAGTACT GCGCGTTACC GCGCTATCTT AA
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Protein sequence | MIDVNEANEI VEVTEQDEVV ISRTRLPFSF ASEHGVVIED GCILHRSDIS APILLELRRH MGRPLILKQV DEAEFKSKLT KLYQSNDGEA QQAVDEMGAE FDLTQLADDI SDDSELLSGD GDAPVIRLIN AVLSQAVQEQ ASDIHVEPYE DRVSIRFRVD GILNEVLSPK PVLAPVLVSR LKVMARLDIA EKRIPQDGRI TVKLAGHAVD IRVSTIPSAH GERVVLRLLD QAAGQLGLPQ LRMPEDVQTN FEKALRKPHG IILVTGPTGS GKTTSLYAGL SYLNTRSRNI LTIEDPIEYL LAGIGQTQVN TKVDMTFARG LRAILRQDPD VVMIGEIRDQ ETAQIAVQAS LTGHLVLSTL HTNTAIGAVM RLQDMGVEPF LLSSSLEGLM AQRLVRLLCS SCKEPHEASA SESQRLGVPE GSIVYRAVGC DKCHQTGYRG RTGIYELIPV DDTLRQLIHE EVGEQAMLAH ARKTVRSIDQ DGREKVLQGM TSVEEVLRVT ALS
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