| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3578 |
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| Symbol | |
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| ID | 3966440 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4536478 |
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| End bp | 4537713 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637922675 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_529045 |
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| Protein GI | 90023218 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.477901 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCGCAT ATACATATCA GGCTCTGAAT GCCAAAGGTA AAAAAGTAAA AGGCATTATC
GAGGGCGACT CTGAGCGTCA CGTCCGCACG CAGTTGCGCG CACAATCGCT AAAGCCTCTA
GATGTAAAAT CCTCCTCTGG GCGTAAAAGC TCGTCAGAGA AAACGGCCAA AAGCCACAGC
AGTTTTTTTG GTGGCCCGCG TTTAGGCTAC CGCGATGTAT CGCTTGTTAC GCGTCAATTG
GCGTCGCTGG TGCAGTCGGG GTTGCCGCTC GATGAAGTGC TGCAATCTAC AGCCAAACAA
TCGCGTAAGC CTGTTGCCAA AAGTGTATTA CTGCAAGTTA GGGCGCGTGT ATTAGAAGGT
ATAAGTCTGC ATCAAGCCAT GGCCGAAGTG CCAAGAGTGT TTGATAACTT ATATCGGGCA
ATGGTGCGCG CCGGTGAATC CTCTGGCTTT TTAGGACCGG TGTTAGAGCA GCTTGCTGAA
TACACAGAGC GCAGCCAAGA AACACGACAA AAACTTCAAA TGGCCATGGT GTATCCCGTG
GTTATGTTGG TTGTTAGCGT ATGTGTTGTA ACCGTACTTA TGGTTAAAGT GGTACCGCAG
TTAACGCAAT TGTTTGAGCG CGGTAAACAC GAACTGCCAG GTATTACCAA GGTTTTGGTT
GCCACCAGTA ATTTTATGGT GGACTACGGC ATATTCTTAT TTGCCGGTGT GACGGCAATA
TTTATTTTTA TTCAGTGGTT ACTTAAAAAC GATGCGCGCA AGCTTAAATG GCATCGCACT
GTATTAAAGT TACCGGTGAT TGGCTCGGTG GTACTGTTGG GCGAAACTGC TCGCTATGCC
TCAACCTTAG GTTTGCTTGC GCACAGCGGG GTGCCGCTGT TAGAAGCGCT GCGTATTGCT
ACTCAAGTAC TGTCTAACCG CGAAATGAAA CTCGCTAGCG AGCAGGTGTG TATTGCCGTG
CAAGAAGGTG GCTCGTTAAG TCGCGCGTTA GATCAGGCTA AAGTATTCCC TCCCTTGTTA
GTGCAAATGG CGGCGAGTGG TGAGTCTAAC GGCAAGCTAG ATGAGCAATT ACTGTACGCT
GCGCGCAACC AAGAGCGCGA GTTGGAGTTT TCTATTAATA CTGCAATGGG CCTGTTGCAA
CCGGCAATTG TGTTGTTGCT AGCGGGTATT GTTATTTTTA TCGTAATGGC AATTCTACTG
CCTATATTTG CGATGAACGA CATGATTGCA GGTTAG
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| Protein sequence | MGAYTYQALN AKGKKVKGII EGDSERHVRT QLRAQSLKPL DVKSSSGRKS SSEKTAKSHS
SFFGGPRLGY RDVSLVTRQL ASLVQSGLPL DEVLQSTAKQ SRKPVAKSVL LQVRARVLEG
ISLHQAMAEV PRVFDNLYRA MVRAGESSGF LGPVLEQLAE YTERSQETRQ KLQMAMVYPV
VMLVVSVCVV TVLMVKVVPQ LTQLFERGKH ELPGITKVLV ATSNFMVDYG IFLFAGVTAI
FIFIQWLLKN DARKLKWHRT VLKLPVIGSV VLLGETARYA STLGLLAHSG VPLLEALRIA
TQVLSNREMK LASEQVCIAV QEGGSLSRAL DQAKVFPPLL VQMAASGESN GKLDEQLLYA
ARNQERELEF SINTAMGLLQ PAIVLLLAGI VIFIVMAILL PIFAMNDMIA G
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