| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3574 |
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| Symbol | |
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| ID | 3966436 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4534335 |
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| End bp | 4534973 |
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| Gene Length | 639 bp |
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| Protein Length | 212 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637922671 |
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| Product | general secretion pathway protein J |
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| Protein accession | YP_529041 |
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| Protein GI | 90023214 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4795] Type II secretory pathway, component PulJ |
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| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 45 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.629666 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGAATAACT CTAAAGCCAA ATGTTCACGT AAGCAGTCGG GCTTTACGTT AATTGAAGTA
CTGGTTTCTA TTACTATTTT AGCCTTGGTT TCGGCTTTGT CGTTTCAAGC ATTCGATATG
GCCGATAGAG CGAGCGATGT AACCAAGCGC AAGCTACAAG AAATTCAGCG CATAGACCGC
TTTTGGTTGG CGTTGGAAAT GGATTTAAAA AACGCTTTGG GTTACTCCAT GACCACCCCT
TATGGGGATA GCTACCCTGC GATGGTGGTA GATAAAAGTG AAAACTATTG GTTGATGTTT
TTGCGCGGTG GCAAGGCAAA CCCTATGCTT TTTCCGCGAA CGGAGATAAC CCGTGTGGGC
TATCGCTATG AAGAAAACAC TATTTGGCGG GACTCGTGGG TAAACCCCGC GAACCCAGAC
CCAGATGAAG CCTTTGCGCA AAAAATGCTT GAGGGTGTAA GCGAAATTAT TGGTGAAGTG
CTTCCGCCAC AGGCGCGCTC AATTGATAAC AACGCATGGC TAGAGCGTTG GCCTCCGCAA
GGGCAGCCAC AATTATTACC CGTTGCAATA AAAATTACGG TAATACTTGA GGATGAACGA
GAGATTTACC GAATTTTTAA TTTGGTAGAG GGCCTTTAG
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| Protein sequence | MNNSKAKCSR KQSGFTLIEV LVSITILALV SALSFQAFDM ADRASDVTKR KLQEIQRIDR
FWLALEMDLK NALGYSMTTP YGDSYPAMVV DKSENYWLMF LRGGKANPML FPRTEITRVG
YRYEENTIWR DSWVNPANPD PDEAFAQKML EGVSEIIGEV LPPQARSIDN NAWLERWPPQ
GQPQLLPVAI KITVILEDER EIYRIFNLVE GL
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