Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3574 |
Symbol | |
ID | 3966436 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 4534335 |
End bp | 4534973 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637922671 |
Product | general secretion pathway protein J |
Protein accession | YP_529041 |
Protein GI | 90023214 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4795] Type II secretory pathway, component PulJ |
TIGRFAM ID | [TIGR01711] general secretion pathway protein J [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 45 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.629666 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAATAACT CTAAAGCCAA ATGTTCACGT AAGCAGTCGG GCTTTACGTT AATTGAAGTA CTGGTTTCTA TTACTATTTT AGCCTTGGTT TCGGCTTTGT CGTTTCAAGC ATTCGATATG GCCGATAGAG CGAGCGATGT AACCAAGCGC AAGCTACAAG AAATTCAGCG CATAGACCGC TTTTGGTTGG CGTTGGAAAT GGATTTAAAA AACGCTTTGG GTTACTCCAT GACCACCCCT TATGGGGATA GCTACCCTGC GATGGTGGTA GATAAAAGTG AAAACTATTG GTTGATGTTT TTGCGCGGTG GCAAGGCAAA CCCTATGCTT TTTCCGCGAA CGGAGATAAC CCGTGTGGGC TATCGCTATG AAGAAAACAC TATTTGGCGG GACTCGTGGG TAAACCCCGC GAACCCAGAC CCAGATGAAG CCTTTGCGCA AAAAATGCTT GAGGGTGTAA GCGAAATTAT TGGTGAAGTG CTTCCGCCAC AGGCGCGCTC AATTGATAAC AACGCATGGC TAGAGCGTTG GCCTCCGCAA GGGCAGCCAC AATTATTACC CGTTGCAATA AAAATTACGG TAATACTTGA GGATGAACGA GAGATTTACC GAATTTTTAA TTTGGTAGAG GGCCTTTAG
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Protein sequence | MNNSKAKCSR KQSGFTLIEV LVSITILALV SALSFQAFDM ADRASDVTKR KLQEIQRIDR FWLALEMDLK NALGYSMTTP YGDSYPAMVV DKSENYWLMF LRGGKANPML FPRTEITRVG YRYEENTIWR DSWVNPANPD PDEAFAQKML EGVSEIIGEV LPPQARSIDN NAWLERWPPQ GQPQLLPVAI KITVILEDER EIYRIFNLVE GL
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