| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3573 |
|---|
| Symbol | |
|---|
| ID | 3966435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4533269 |
|---|
| End bp | 4534333 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637922670 |
|---|
| Product | general secretion pathway protein K |
|---|
| Protein accession | YP_529040 |
|---|
| Protein GI | 90023213 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3156] Type II secretory pathway, component PulK |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.672104 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGTTGA AGTATACAAA TAGGCCAACG AAATCCCCCG CGCCAAGCAA AGAAAAGGGC
GTGGCTTTGG TATTGGCGGT GATGATATCC GCAATTGTAG TGGCCATTAG TGTTAAAGCG
AGTTGGCACT TTGATATGGG CTTAACGCGT TCGGCCAATC GTTGGCACAG CCAGCAGGCT
GATGCGTATA TGGTTGGCTT AGAAGGTTTG GTGCACAGCG CACTCAAAGT AGATAAAGAA
GAGACTGAGT ACGATCACCT TGGTGAATTT TGGGCAATGG AGCAGCCGCC GTTCCCAACC
GATGAAGGCG GCTATATAAA AGGTGTAATT GAAGATGCTC ATGGGCGACT TAATTTAAAC
CTGCTAGCTA AAAAGGGCAA TCAAAAACCC GGTGCACCTT TGCACGAAAA ATACACCACA
AGCCAAAAGC GTTTTATACG TTTGTTGCAA ACCATAGAAC TGGAAGAAGG TGAATTCTTA
ACAGAGGGCG ATGCGGTAAC ACTTACCGAC GCAGTAATAG ATTGGATAGA CCCAGATAAC
GATGTATCGG GTTTTGGCGG TGCGGAATCG GACTACTATT CGAGTTTGGA AATACCAATT
CAAATAGCCA ACCGGCCGAT GATAAGTGTA AGCGAATTAA TGGTTATAAA AGGTATGACG
CCGCAGCTCT ACCGCGGTTT ATTGCCCTAC GTTATTGCAT TAAATGATCC AACCGCAATG
ACAAATATAA ATACCATGTT GCCACCGTTG TTGCGCACGC TGAACAGCCC AGAGTTACTC
GTGCCGCTCA CAATTGAAGA AGCTGAGCAA ATGGTGGAGG GGCGAGGTGC CGAAGGTTTT
GAATCGATTG AATTCTTTAA AGATTCAGAT GTAGTAGCAA TGGTGCTGGG GTCGGGGCAT
GGAAATAACC CCGCAGTAAG CACAGAGGAT TTAACAGTAA ACAGCGACTA TTTTTTGCTC
TTTGGCGAGG TAATGGTTGG TGATCATACT CGACGTAGCA ATGCCCTGCT TTTTAGAGCG
GGCGATAAAG TTGTTACCCT TCGCCGTACA GACGCGAATT TTTAA
|
|---|
| Protein sequence | MPLKYTNRPT KSPAPSKEKG VALVLAVMIS AIVVAISVKA SWHFDMGLTR SANRWHSQQA
DAYMVGLEGL VHSALKVDKE ETEYDHLGEF WAMEQPPFPT DEGGYIKGVI EDAHGRLNLN
LLAKKGNQKP GAPLHEKYTT SQKRFIRLLQ TIELEEGEFL TEGDAVTLTD AVIDWIDPDN
DVSGFGGAES DYYSSLEIPI QIANRPMISV SELMVIKGMT PQLYRGLLPY VIALNDPTAM
TNINTMLPPL LRTLNSPELL VPLTIEEAEQ MVEGRGAEGF ESIEFFKDSD VVAMVLGSGH
GNNPAVSTED LTVNSDYFLL FGEVMVGDHT RRSNALLFRA GDKVVTLRRT DANF
|
|---|
| |