| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3481 |
|---|
| Symbol | |
|---|
| ID | 3966323 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 4435150 |
|---|
| End bp | 4436331 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637922578 |
|---|
| Product | drug transport transmembrane protein |
|---|
| Protein accession | YP_528948 |
|---|
| Protein GI | 90023121 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0738] Fucose permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.00472777 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0481041 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTCAC TACCGCGCAA TGTCTGGGTG CTAGCCTGCA CCATATCGTT AACAATGGCT
GGAATTTCGC TGCTAATGCT GGTTGGCGGG CTTATTGGTG CCGAGCTTGC GCCCAGCCCA
AGCTTGGCCA CGCTGCCCAT TGCCGCTTTT GTGGTTGGCA TGGCTGCCAG CACTATTCCC
GCCACCATGA TTCTGAAGCG CTTTGGCAGA AAGGCCGGCA CCTATTTTGG TTTTTCTGCC
ACCGTACTCG CTGCGCTGTG CGCAATAACG GCCGTGAACA GTCACAATTT TTGGCTTATG
GTGTGCTGCG GCTTACTTAT CGGCACGGGC ACAGCGTTTT ATCAGCAGTT TCGTTTTGCC
GCTATAGAAA GCCTATCCGA CCCAAGCAAT ACCGGCCCCG CACTTTCGGC ACTTATGCTT
TTTAATATTG TGGGCGCATT AATAGGGCCA GAATTAGGCA CGCTCGGCCG CCACATGCTT
AGCGGCTATG CAGAGTACAC CGGCTCGTTC TTATTATTAA TTGGCCTTAT TGTATTGGCG
ATGCTGATAT TTAGCCTGTT TAACAACCCC ATTGCTTCAG CAACAAACAC AACATCTAGC
GCCCGTCCGC TCAAAGACAT TGTTCGCCAA CCCCTGTTTA TTATTGCGTT AATTTCCGCA
GGTTTTGGTT ATGGCTTAAT GAGCTTTTTA ATGACCTCTA CACCGCTTAG CATGCATACC
CATCACGGTT ACAGCTTGGC CGATGCTAAA TGGGTAATAC AAAGTCATTT AGTGGCCATG
TTTTTACCCA GTTTATTTTC CGGCTTTTTA CTTAAGAAGC TGGGCGAAGG CAAAGTTATG
CTACTGGGCG GAATACTCTA CGGTGTGGTT ATTCTTGTTG CGTTTGCGGG GCAGGCGTTG
ATGCATTATT GGTGGGCACT GGTTTTACTT GGTGTAGGGT GGAATTTTTT ATTTTTAAGC
GGCACAAGCT TACTACCCAA AACCTATAAG CACGAAGAAC GCTTTAAGGC GCAAGCGGTA
AACGACTTTA TTGTGTTTAC CGTGCAAGCA ACTGCCGCAC TAAGTGCCGC CTGGGTGCTG
TTTGAGTTTG GCTGGCACAC GCAAGTGACA ATAGGTATTC CACTTACTGT GGTTATAATT
ATTGGCGCTA CGGTATTAAT AAGGCAACCA AAGAATACAT AG
|
|---|
| Protein sequence | MLSLPRNVWV LACTISLTMA GISLLMLVGG LIGAELAPSP SLATLPIAAF VVGMAASTIP
ATMILKRFGR KAGTYFGFSA TVLAALCAIT AVNSHNFWLM VCCGLLIGTG TAFYQQFRFA
AIESLSDPSN TGPALSALML FNIVGALIGP ELGTLGRHML SGYAEYTGSF LLLIGLIVLA
MLIFSLFNNP IASATNTTSS ARPLKDIVRQ PLFIIALISA GFGYGLMSFL MTSTPLSMHT
HHGYSLADAK WVIQSHLVAM FLPSLFSGFL LKKLGEGKVM LLGGILYGVV ILVAFAGQAL
MHYWWALVLL GVGWNFLFLS GTSLLPKTYK HEERFKAQAV NDFIVFTVQA TAALSAAWVL
FEFGWHTQVT IGIPLTVVII IGATVLIRQP KNT
|
|---|
| |