Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3481 |
Symbol | |
ID | 3966323 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 4435150 |
End bp | 4436331 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637922578 |
Product | drug transport transmembrane protein |
Protein accession | YP_528948 |
Protein GI | 90023121 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0738] Fucose permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.00472777 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0481041 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTTCAC TACCGCGCAA TGTCTGGGTG CTAGCCTGCA CCATATCGTT AACAATGGCT GGAATTTCGC TGCTAATGCT GGTTGGCGGG CTTATTGGTG CCGAGCTTGC GCCCAGCCCA AGCTTGGCCA CGCTGCCCAT TGCCGCTTTT GTGGTTGGCA TGGCTGCCAG CACTATTCCC GCCACCATGA TTCTGAAGCG CTTTGGCAGA AAGGCCGGCA CCTATTTTGG TTTTTCTGCC ACCGTACTCG CTGCGCTGTG CGCAATAACG GCCGTGAACA GTCACAATTT TTGGCTTATG GTGTGCTGCG GCTTACTTAT CGGCACGGGC ACAGCGTTTT ATCAGCAGTT TCGTTTTGCC GCTATAGAAA GCCTATCCGA CCCAAGCAAT ACCGGCCCCG CACTTTCGGC ACTTATGCTT TTTAATATTG TGGGCGCATT AATAGGGCCA GAATTAGGCA CGCTCGGCCG CCACATGCTT AGCGGCTATG CAGAGTACAC CGGCTCGTTC TTATTATTAA TTGGCCTTAT TGTATTGGCG ATGCTGATAT TTAGCCTGTT TAACAACCCC ATTGCTTCAG CAACAAACAC AACATCTAGC GCCCGTCCGC TCAAAGACAT TGTTCGCCAA CCCCTGTTTA TTATTGCGTT AATTTCCGCA GGTTTTGGTT ATGGCTTAAT GAGCTTTTTA ATGACCTCTA CACCGCTTAG CATGCATACC CATCACGGTT ACAGCTTGGC CGATGCTAAA TGGGTAATAC AAAGTCATTT AGTGGCCATG TTTTTACCCA GTTTATTTTC CGGCTTTTTA CTTAAGAAGC TGGGCGAAGG CAAAGTTATG CTACTGGGCG GAATACTCTA CGGTGTGGTT ATTCTTGTTG CGTTTGCGGG GCAGGCGTTG ATGCATTATT GGTGGGCACT GGTTTTACTT GGTGTAGGGT GGAATTTTTT ATTTTTAAGC GGCACAAGCT TACTACCCAA AACCTATAAG CACGAAGAAC GCTTTAAGGC GCAAGCGGTA AACGACTTTA TTGTGTTTAC CGTGCAAGCA ACTGCCGCAC TAAGTGCCGC CTGGGTGCTG TTTGAGTTTG GCTGGCACAC GCAAGTGACA ATAGGTATTC CACTTACTGT GGTTATAATT ATTGGCGCTA CGGTATTAAT AAGGCAACCA AAGAATACAT AG
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Protein sequence | MLSLPRNVWV LACTISLTMA GISLLMLVGG LIGAELAPSP SLATLPIAAF VVGMAASTIP ATMILKRFGR KAGTYFGFSA TVLAALCAIT AVNSHNFWLM VCCGLLIGTG TAFYQQFRFA AIESLSDPSN TGPALSALML FNIVGALIGP ELGTLGRHML SGYAEYTGSF LLLIGLIVLA MLIFSLFNNP IASATNTTSS ARPLKDIVRQ PLFIIALISA GFGYGLMSFL MTSTPLSMHT HHGYSLADAK WVIQSHLVAM FLPSLFSGFL LKKLGEGKVM LLGGILYGVV ILVAFAGQAL MHYWWALVLL GVGWNFLFLS GTSLLPKTYK HEERFKAQAV NDFIVFTVQA TAALSAAWVL FEFGWHTQVT IGIPLTVVII IGATVLIRQP KNT
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