| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3471 |
|---|
| Symbol | |
|---|
| ID | 3966313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4421631 |
|---|
| End bp | 4422671 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637922568 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_528938 |
|---|
| Protein GI | 90023111 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2267] Lysophospholipase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.00814708 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0128329 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAACA ATGCGTTACC CTTTTCGTTC GCCGTTGCAG GTGAGGCCTT AACAGAACCC
GCCATTGCCG AGTTGCGCAG CCAACTAAGC CCGCTAAATA GTGCTGCCGT TATGGATGTA
CTCGATGGCC CCTCACCAGC GTTTACCGAT TATTTTGCAC ATTACGGCTT TGTTGAGCTA
AGTGCAGCTA AACCTCATGC GCAATACCGT ATTGGTACTT TGGCGCTTTC CAATGGTTTG
CAGTTGGTGG CTCACAGTTG GAGCCAAGTC GATGCTCGCG CGACTGTGTG TCTTTTTCAC
GGTTTGTTTG ACCACACAGG GCTTTATTTA ACCTTAGTAG AGCATTTGCT GTCTGAGGGG
CTCAATGTAA TAGCCCTAGA TATGCCCGGC CATGGTTTAA GTGAAGGCGC GCGTGCGGCG
ATACAATCTT TTACCGATTA CGCCGCTGTA GTGGAAAGCG CAGTAAACCA CGCCAAGCAT
GTTGCCCCAG CGTTGCCAGT AATGGCGCTT GGCCAGAGTA CAGGTGCAGC GGCAGTTATG
AACTATCAGC TGGCTTTTGG TGAGCGCGGC GCTTTGGCAA AGGCTGTGTA TTTGGCCCCA
TTAATTCGGC CCCATAAGTG GGCACTTATT CGCGGCGCTA TCGCGCTACT GGGGCCTATG
TTGGCTACCT TCCCGCGCGG TTTTTCGGTT AACTCACACA ATCAAGATTT TTGCGACTTT
TTAAAACTGC ACGATCCGCT GCAATCACGT AGTCTTTCTA TACCATGGCT TAAAGCAATG
GCGGGCTGGG TTGGGGTAAT TGCGCTGCGA TTTGAAAAAG GGGAAGCTGC CCCGGAGTTG
GCTGATACGC CTTTATTAAT AGTACAAGGT ACTGGCGATA AAACAGTCGA TTGGCAAAAA
AATATAGAAT ATCTACAAGA GCTGGCACCT AGCGCCCAAA TTGTACTTGT GGATCAAGCT
AAGCATCATT TAGTAAATGA ATTAGATTCT TTTCGTACAC CAATGTTTGA ATCTGTTGCT
CATTTCTTTC GTTCAATATG A
|
|---|
| Protein sequence | MANNALPFSF AVAGEALTEP AIAELRSQLS PLNSAAVMDV LDGPSPAFTD YFAHYGFVEL
SAAKPHAQYR IGTLALSNGL QLVAHSWSQV DARATVCLFH GLFDHTGLYL TLVEHLLSEG
LNVIALDMPG HGLSEGARAA IQSFTDYAAV VESAVNHAKH VAPALPVMAL GQSTGAAAVM
NYQLAFGERG ALAKAVYLAP LIRPHKWALI RGAIALLGPM LATFPRGFSV NSHNQDFCDF
LKLHDPLQSR SLSIPWLKAM AGWVGVIALR FEKGEAAPEL ADTPLLIVQG TGDKTVDWQK
NIEYLQELAP SAQIVLVDQA KHHLVNELDS FRTPMFESVA HFFRSI
|
|---|
| |