| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3458 |
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| Symbol | |
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| ID | 3966281 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4398792 |
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| End bp | 4399889 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637922555 |
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| Product | diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase |
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| Protein accession | YP_528925 |
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| Protein GI | 90023098 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00885908 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTAATT ATTCAGTTGC TGACCAACGC TTTATGACGC GCGCAATGCA ACTTGCTCGC
GAAGGCACTT ACACCACAAC CCCTAATCCA CGGGTGGGCT GTGTGTTGGT GGATGCAGCG
AATAACATTG TGGGCGAGGG CTACCACGTG CGCGCCGGCG AAGGTCACGC AGAGGTCAAC
GCCATTGCCG ATGCTGGCGC TGCCGCACGC GGAACAACAG CTTATGTCAC CCTAGAGCCG
TGTAGTCACA CCGGTAAAAC CGGCCCCTGC TGCGAAGCGT TAGTTGCGGC AGGTGTAAGC
CGCGTTGTGT ATGGCATGGA AGACCCCAAC CCCAAAGTGG CGGGCAGGGG CTTAGATCAC
CTCGAAGCCG CAGGCATTCA AGTAGATGGG CCGGTGCTAG AATACGATGC CTACGAGCTT
AACCCTGGTT TTATAAAGCG CATGCGTCAA GGCTTGCCGT TAATTCGCAT CAAAATGGCA
ATGAGCTTAG ATGGCCGCAC CGCAATGGCC GACGGCACCA GCAAGTGGAT TACCAGCCCC
AGGGCGCGCG ACGATGTACA GCGTTTGCGC GCGCGCAGTT GCGCTCTTAT TACAGGTGTA
GACTCGGTTT TGTTGGACGA CCCATCGCTA ACCGTGCGCC TGTCGGACGA TGCCCGCCAA
CCATTGCGGG TAATTGTAGA TAGTAAGTTG CGCCTACCTA AAGATGCCGC CATTCTTAGC
CAGCCTGGTA AAACCGTCAT CGCTACCTGT GCTAATGTAA ATCAAGCACA AAGCCCCTAT
GGCGACACCG AAATTTGGAC GCTGCCCGAA AAAGACGGCC GTGTTAGCCT GCAAGCCCTA
GCGCGCAAGT TAGCGCAGCA AGAGTGCAAT GAAGTATTGG TAGAAACTGG CGCAACTCTG
GCCGGTGCAT TTGTATCCAG TGGGCTAGTG GATGAGCTTG TTATTTACAT GGCAGGCAAA
CTATTGGGCA GTACCGCCCG TCCGTTGTTT GATATACCCA TCAGCAAAAT GAGCGCCCAA
TTGCCGTTAT CTATTACCGA TATTCGTGCA ATTGGCGATA ACTGGCGTAT TACCGCCATT
CCAGACCCAG AAGGTTAG
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| Protein sequence | MSNYSVADQR FMTRAMQLAR EGTYTTTPNP RVGCVLVDAA NNIVGEGYHV RAGEGHAEVN
AIADAGAAAR GTTAYVTLEP CSHTGKTGPC CEALVAAGVS RVVYGMEDPN PKVAGRGLDH
LEAAGIQVDG PVLEYDAYEL NPGFIKRMRQ GLPLIRIKMA MSLDGRTAMA DGTSKWITSP
RARDDVQRLR ARSCALITGV DSVLLDDPSL TVRLSDDARQ PLRVIVDSKL RLPKDAAILS
QPGKTVIATC ANVNQAQSPY GDTEIWTLPE KDGRVSLQAL ARKLAQQECN EVLVETGATL
AGAFVSSGLV DELVIYMAGK LLGSTARPLF DIPISKMSAQ LPLSITDIRA IGDNWRITAI
PDPEG
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