Gene Sde_3456 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3456 
Symbol 
ID3966279 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand- 
Start bp4396972 
End bp4398084 
Gene Length1113 bp 
Protein Length370 aa 
Translation table11 
GC content50% 
IMG OID637922553 
Product3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II 
Protein accessionYP_528923 
Protein GI90023096 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase
[COG0807] GTP cyclohydrolase II 
TIGRFAM ID[TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones7 
Fosmid unclonability p-value0.0031951 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGAACTGA ATACCACAGA AGAAATTATT GATGAAATCC GTCAGGGCCG CATGGTTATC 
TTGATGGACG ACGAAGATCG CGAAAACGAA GGCGATCTTA TTATGGCTGC CGAGCAAGTG 
CGCCCCGAAG ACATTAACTT TATGGCGACC CACGCCCGCG GGTTAATTTG TTTGACCCTG 
TCGGAAGAGC GCTGCAAGCA ACTCGATTTG CCTCTTATGG TACGCGACAA TCACGCCGCG 
CATTCCACTA ACTTTACCGT ATCTATCGAG GCGGCCGAGG GCGTAACAAC GGGAATTTCC 
GCCGCCGACC GCGCGCGCAC CATTCGCGCT GCGGTTAAAC GCGATGCTTT GCCACGCGAT 
TTAGTTCAGC CGGGGCATAT CTTCCCGTTA ATGTCTCAAC CTGGCGGTGT ACTAAGCCGA 
GCTGGCCACA CAGAGGCAGG CTGCGACTTG GCGCGTTTGG GTGGCTACGA GCCAGCTGCC 
GTTATAGTGG AGATTATGAA CGAAGATGGC AGCATGGCGC GCCGCGAAGA TTTAGAAAAA 
TTCGCAAAGC TGCACAATAT TAAAATTGGC ACCATCGCCG ATTTAATTCA GTACCGTGCC 
ATTAACGAAA AAACCGTTAC CTGTATTAAC GAGCGCACCG TACACACCAA TCACGGCGAA 
TTTATTTTAA AAACCTATTT AGATAAAGCG CGCAAAGAGT GCCATTTTGC CTTACTGAAA 
GGCGAGGTTC GCCCCGACGA ACCCACGCTT GTGCGTGTGC ATGTGGGCAA CACCGCGCGC 
GACGTATTAG GTGTGCAGCG CACCGACATG GATAACCTTT CGTGGAGCTT CCAAGATGCC 
ATGAAACGCG TGGCAGAAGA GGGCAACGGC GTGCTGGTAT TAATTTGCCA CAACGAAACC 
ACCGAAGAAA TTGAAGAAAG TATCGATTGG ATGCTAAGCG GTAAAAAAGC GCGCCCTCGC 
CAAGACGTAG CCTACAAACA AGTGGGTACC GGTTCGCAAA TACTTAAAGA TTTAGGCGTA 
AGTAAAATGC GTTTGCTAAG CGCACCTTTC AAATTCAAAG CTATTTCTGG TTTTAATTTA 
GAAGTTGTGG AATACCTTAA AAACGACGCA TAA
 
Protein sequence
MELNTTEEII DEIRQGRMVI LMDDEDRENE GDLIMAAEQV RPEDINFMAT HARGLICLTL 
SEERCKQLDL PLMVRDNHAA HSTNFTVSIE AAEGVTTGIS AADRARTIRA AVKRDALPRD 
LVQPGHIFPL MSQPGGVLSR AGHTEAGCDL ARLGGYEPAA VIVEIMNEDG SMARREDLEK 
FAKLHNIKIG TIADLIQYRA INEKTVTCIN ERTVHTNHGE FILKTYLDKA RKECHFALLK 
GEVRPDEPTL VRVHVGNTAR DVLGVQRTDM DNLSWSFQDA MKRVAEEGNG VLVLICHNET 
TEEIEESIDW MLSGKKARPR QDVAYKQVGT GSQILKDLGV SKMRLLSAPF KFKAISGFNL 
EVVEYLKNDA