| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3448 |
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| Symbol | |
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| ID | 3966252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4390043 |
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| End bp | 4391827 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637922545 |
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| Product | Pectate lyase-like |
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| Protein accession | YP_528915 |
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| Protein GI | 90023088 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3866] Pectate lyase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.372442 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00149155 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAATTT TTAAATTGTT ATTAATGTTT GTACTCGCCC ACAACTTAGT TGCTTGTGGT
GGCAGTAACG ACGGTGGTGA AATTGAATTA AACTTTGGCG AAGAAAACAC ACCAGAGCCA
GAAACCGAAC CAGAAGCTGA GCCTGAAGGA GAACCAGAGG GCGAGCCGGA GGGAGAACCT
GAAGGAGAGC CTGAAGGGGA ACCAGAGGGC GAAACAGCCG ACGCAACCGC AGATGCTGGC
TTCGCCGGCC ACAATTTTAA TCTTACCGGT GGCGAAGGCG GCACAGCCTA TACCGTTAAT
AACGGCAAAG ATTTGCAAAC AGTTTTAGAC AACGCCAAAT CGAGTAATTC ACCGGTCATT
ATTTACGTAG ACGGCACCAT AAATTCGTTT AACTCTGCCA ACGGCAACCA GCCTATTCAA
ATTAAAGATA TGGATAACGT ATCTATAATT GGTTACGGCG CCGAAGCAAC ATTTGACGGT
GTTGGTATAG CAATACGCCG CGCCAACAAC ATTATTATTC GCAACCTTAC TTTTAAAAGC
GTCCTTACCG AAGGTAAAGA TGCAATTAGT ATAGAAGGTG ATGACGACGG CAGCACCACG
TCAAACATTT GGGTTGATCA CAACGAATTC TACAGCGCCC CAACGGCAGA CAAAGATTTT
TACGACGGTT TAATCGATAG TAAAAGCGGC GCGAGCAACA TTACTATTTC TTACAACTAC
CTGCACGACC ATTGGAAAGC ATCGTTACAC GGCCATACCG AAAATGACGA AGGTGCACAC
AACACCGACC GCAAAATTAC TTTCCACCAC AACCGTTTTG AGAATATTGA ATCGCGTTTA
CCGCTGTTCC GTCGCGGTGT AGGCCATTTG TACAATAACT ACTACAAAGA CGTAGGCTCA
ACGGCTATCA ACTCACGTAT TGGTGCCGAG TTATTAATTG AGAATAACGT TTTTGAAGAT
TCACAAAACC CGATTGTCTC TTTTTACTCT GACGTAATTG GGTACTGGAA CACCTCAGGC
AACCTCTTCA CCAATGTAAC TTGGACAACC CCAGGTACTG GCGAAGTATC TGCAGGCGCA
ACACAAACGC CAACCTCAGA TTACGTAGTG CCATACAGCT ACACGCTTAT GCCGGCAGCC
GATGTAAAAG CCCACGTCAT TGCGAGTGCA GGCGTTGGCA AAATAGACCA GACAGGGCTT
ACCATTCCAG ACCCCGTTAC CCCTGAAGGC GACCTAGGTG AACCAGAAGC CCCAGTGCAA
GGTGATGTAA GCCTACCTTA CACTGAAAAT TTTGCCGCCA CTGACGCCGC CAATTTCTTT
AGCGCCGCGT ACCGCGATAT TACTGGCTCT GCTGGCACCA GCACACCCAT GTACCACCGC
GTAACCGGCA CGGTGGAAAT TAACGCACAG CAATTGGATA TGACTGGCGC ACGCGTATCA
ATTGGCAACA CAACGCCAAG TGTAAGCACA ACCGGTGCAG ACACCACTAC AACGGGCGTA
TTAGATTTAA GCGCGCCCTA CACCGTAAGC TTTAAAGTGG TAAGCGTAGG CGGCACCCTA
ACTAAGAAAT TTCAAATATA TGTAGACAAC AATACCTCTG CCAGCGGCGA CTCTATTCAC
GGCGGCTCAT CGCGCTTTTA CAGTGAAACT TTAGACTCGC TAGTTGCAGG CCAAACCTAC
ACAGTAACCG GCTTTACCGC CACCAACAGC TCTTTCATAA CATTACGTAC CGAAAGTAGC
GGCCAAATTG TATTAGATGA CCTAAGTATT CAAGCCGCAG AATAA
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| Protein sequence | MKIFKLLLMF VLAHNLVACG GSNDGGEIEL NFGEENTPEP ETEPEAEPEG EPEGEPEGEP
EGEPEGEPEG ETADATADAG FAGHNFNLTG GEGGTAYTVN NGKDLQTVLD NAKSSNSPVI
IYVDGTINSF NSANGNQPIQ IKDMDNVSII GYGAEATFDG VGIAIRRANN IIIRNLTFKS
VLTEGKDAIS IEGDDDGSTT SNIWVDHNEF YSAPTADKDF YDGLIDSKSG ASNITISYNY
LHDHWKASLH GHTENDEGAH NTDRKITFHH NRFENIESRL PLFRRGVGHL YNNYYKDVGS
TAINSRIGAE LLIENNVFED SQNPIVSFYS DVIGYWNTSG NLFTNVTWTT PGTGEVSAGA
TQTPTSDYVV PYSYTLMPAA DVKAHVIASA GVGKIDQTGL TIPDPVTPEG DLGEPEAPVQ
GDVSLPYTEN FAATDAANFF SAAYRDITGS AGTSTPMYHR VTGTVEINAQ QLDMTGARVS
IGNTTPSVST TGADTTTTGV LDLSAPYTVS FKVVSVGGTL TKKFQIYVDN NTSASGDSIH
GGSSRFYSET LDSLVAGQTY TVTGFTATNS SFITLRTESS GQIVLDDLSI QAAE
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