Gene Sde_3434 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3434 
Symbol 
ID3966238 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp4371101 
End bp4373125 
Gene Length2025 bp 
Protein Length674 aa 
Translation table11 
GC content40% 
IMG OID637922531 
Productoxidoreductase, FAD-binding 
Protein accessionYP_528901 
Protein GI90023074 
COG category[C] Energy production and conversion
[R] General function prediction only 
COG ID[COG0633] Ferredoxin
[COG1018] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
[COG3576] Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000581743 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAAACGGT TACAACCTTC CCAGTTTCAC CAAGCAGAAA AGGCAGTACA GAAACGTTTG 
GGCGTGGCTG ACATGGTAGC ACAGCACAGC GAAGGGTACA TTCGCTCCAC TATGCCCGGT
CAGCACCGAG ATTTCTTTAC AAATCTTCCC ATGGTGATAG TGAGCATCAC AGACTTCGAC
GGCTTCCCAT GGCCTATACC ATTGCATGGA AAGCCTGGTT TTATTAAATC ACCCAATGCA
AATACACTCG AAATAGAAAC CTACCCCACA CTTAAGGACG TGCTAAAACT TAACTTTAAA
AAAAGTCAAA AAATAGGCAT TCTTGGAATT GAGCTGCATA CACGCCGTCG CAATCGTATG
AATGGCACAA TTAAAGAGAT AAACAACAAC AGCTTCTTAG TTATATGCGA ACAAAGTTTT
GGTAATTGCC CTCAATATAT CCAAAAGCGT GAGTTACACT GGGTCGATAC GCCTCAAAAG
TGTTTGCAAA CAGAAGATAT TTTTTTAACG AATACACTAA CTTCGACCTG TGCAGAATGG
ATTGAATCCT CAGATACATT TTTTATTAGC TCCCGAACCA AACGTCTTTC TACCGATAAA
CGTGACGGCC TAGATGTTTC CCATCGAGGA GGAAAACCAG GATTCGTAAA AGTTGAAAAC
GACACTTTAT ATTTCCCGGA TTTTAGTGGT AATCAGTTTT TTAATACACT TGGTAATATA
CAATCTGACA GCCGAGTGGG CTTATATTTC CCCGATTATG AAAGTGGAAA AATTATACTT
ATATCGGGTA CAGCTAAAAT TATCTGGGAT AAAGAATTAA CTAGAATATT TGAAGGAGCA
GAACGAATTA TTTCTGTAAA GGTACGCAAT TGCCTTATTC TCGACAGTTT TCTTCCCATG
CGAGGCGTGC TTACCGAGCT TTCGCCATCA CTGATACGCA CAGGCACATG GGAAAATCCT
CAAGAAAAAA GCGCAGCTAG AGTATATAAG CAGTTTAAAA TAATAAAGAA GATAAAGGAA
AGCCGTGACG TTACGTCGTT TTATATTAGG CCTCTAGATG GCAGCGCGTT AAGTTCTTAT
CTACCAGGTC AATTTTTACC TATTAGTATC AAGCAACCCC ATACATCATC TACCTGCCTG
CGAACGTACA CACTGTCACA AGCACCACTA AGCAACGCTT ATCGCTTTTC CGTTAAACGT
GAAAAATTTG GCCTAGCATC TCGTATATTA CACGACACCA TTAACACCGG CGATAGTCTT
TATGTAAGTC AACCCGAAGG AAAATTCACA TTACAAACCA ACAAAAAAAC AAATGTTTTA
TTGTCAGCCG GTATTGGTAT TACGCCAATG ATAGCCATGC TGCAAGGGCT AATTCGAGAA
GTAGAAAAAG GTGAAAAACC ACAAGATGTA TATTTTATTC ATAGCACCCA GAATTCAGAG
ACACATACAT TTGCAAATGA ACTAAAACAC CTCAACAAAC GACACAAATG GCTACAACTC
TACACAATTT ACTCCCAACC AAAACTGAAT GACAAACTAG GACAGCACTA TGATGTATCA
GGAAGAATAT CGCTAGATCT ACTTAGAAAA ATACTTCCTA CCGATAATTT TGACGTATAT
CTATGTGGTT CTGAATCTTT TATGCGCTCA AGCTATACAA ATTTAAAAGC GATGGGTATC
GCTGAATCTA GAATATTTTA TGAGTTTTTC GACGACGGTT CATTTGAAAG CCATCAGCTA
AACAAATTTC AAACAGCACA GCGAGCTGAA ATATATTTCG CAAAAAGTAA CATTACCGCA
ACGTGGACAC CAAACGACGG TACCTTATTA CAATTTGCCG AAAAAATGGG TTTAAAACCA
ATGTATAGCT GTCGCACTGG TAACTGCGGC ACTTGTAGCT GCACGCTAAG CACCGGCGAA
GTAACCTACG CCAATAAACC CGGCTATACA CCAGCAAATG GTAGCGCTTT AATATGCTGC
GCCCGCCCCG CACTAAACAC CACCAAGTTA ACCTTTCACA TATAA
 
Protein sequence
MKRLQPSQFH QAEKAVQKRL GVADMVAQHS EGYIRSTMPG QHRDFFTNLP MVIVSITDFD 
GFPWPIPLHG KPGFIKSPNA NTLEIETYPT LKDVLKLNFK KSQKIGILGI ELHTRRRNRM
NGTIKEINNN SFLVICEQSF GNCPQYIQKR ELHWVDTPQK CLQTEDIFLT NTLTSTCAEW
IESSDTFFIS SRTKRLSTDK RDGLDVSHRG GKPGFVKVEN DTLYFPDFSG NQFFNTLGNI
QSDSRVGLYF PDYESGKIIL ISGTAKIIWD KELTRIFEGA ERIISVKVRN CLILDSFLPM
RGVLTELSPS LIRTGTWENP QEKSAARVYK QFKIIKKIKE SRDVTSFYIR PLDGSALSSY
LPGQFLPISI KQPHTSSTCL RTYTLSQAPL SNAYRFSVKR EKFGLASRIL HDTINTGDSL
YVSQPEGKFT LQTNKKTNVL LSAGIGITPM IAMLQGLIRE VEKGEKPQDV YFIHSTQNSE
THTFANELKH LNKRHKWLQL YTIYSQPKLN DKLGQHYDVS GRISLDLLRK ILPTDNFDVY
LCGSESFMRS SYTNLKAMGI AESRIFYEFF DDGSFESHQL NKFQTAQRAE IYFAKSNITA
TWTPNDGTLL QFAEKMGLKP MYSCRTGNCG TCSCTLSTGE VTYANKPGYT PANGSALICC
ARPALNTTKL TFHI