| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3427 |
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| Symbol | |
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| ID | 3966153 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4362245 |
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| End bp | 4363351 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637922524 |
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| Product | putative diguanylate cyclase (GGDEF) |
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| Protein accession | YP_528894 |
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| Protein GI | 90023067 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000401587 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAGCAAT TATTTAGGTA CATCTCTCTT CTCGAGCCCA CTCGCGGTAT TTCAAAGCAT
GATTTTAATA GGCGCTACGC CCATTGGGAC ATGTCTTCAC GTCAAATTCA AATATCTGCT
ATTAGCTTTT TAACTGCCGT ATTGTACGTG GCCTTTGCAT TTTTGGAAAA ACCTTGGGCT
AGCGAGCAAG TAGAAGTGCT AATGTTTAAG CTGCATATTT TTGTAAATGT TCCATTGCTA
TTGGGGTTAA GCTTTTTGGC CTATAAGCAG CGTTTTTATC GCTATGTAAT GCCTTCCTTT
GCTGCCCTAC CCATTGTATC CATGTCCTGC CATGCGGTTA TTGCTAGCAA GCTGGTAAAT
TACACGCCGT TCGCACCCGA AGCCTATTTG GGTGTGGTGT GGATATTCGT TGTATCTGGT
ATGACTTTTC GCTATGCCTT AATCAGTGCC ATTACAGCGC TGTGTATATT AGCTGGGTCG
GCTTTCTATT TTATCGAGCA ACAGAGTAGT TACGTAATGC ATGTATTTTG GTTGGCATGC
AGCTTTTCGT TCGGTTTTTT GGGGGCGCTT ATGCTTGATA GATCCCGCAA GCAGTTCTTT
GTTAGTCAGC AAGAGTTACA ACACCTAGCT GTTACCGACC CGTTAACCGG CCTTTACAAT
CGCAATCAAT TGAACATTGT GCTTAATAAA GAGATGGCGC GCGAGCAGCG CTATAACCGA
TCTTTTGGGT TGTTGGTAAT AGATGTAGAT TTCTTTAAAA GCATTAATGA TTCCTTCGGA
CACGAAGCTG GGGATAATGT ATTAAAACAA ATATCGCAAG ACCTGCTGCA ATCGGTACGT
AAAATCGATA CGGTAATTCG CTGGGGCGGA GAAGAATTTA TTGTTGTTGC GAGTGAGGTG
GATAAACAAA GTATTGTGGC CTTGAGTGAA AATTTGTGTA AGAAAATAGA GGGTAGTGAA
TTTAACGGGG TAGGGCGTGT AACGGTTAGC ATAGGGGCTA CTTTATACAA GCTGGATGAC
ACCCCATCTG ACCTGCTTAG CCGTGCAGAT AAGGCTTTGT ATAAGGCTAA AGAAACCGGT
CGAAATATTG CTATTTATAC GTCCTAG
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| Protein sequence | MQQLFRYISL LEPTRGISKH DFNRRYAHWD MSSRQIQISA ISFLTAVLYV AFAFLEKPWA
SEQVEVLMFK LHIFVNVPLL LGLSFLAYKQ RFYRYVMPSF AALPIVSMSC HAVIASKLVN
YTPFAPEAYL GVVWIFVVSG MTFRYALISA ITALCILAGS AFYFIEQQSS YVMHVFWLAC
SFSFGFLGAL MLDRSRKQFF VSQQELQHLA VTDPLTGLYN RNQLNIVLNK EMAREQRYNR
SFGLLVIDVD FFKSINDSFG HEAGDNVLKQ ISQDLLQSVR KIDTVIRWGG EEFIVVASEV
DKQSIVALSE NLCKKIEGSE FNGVGRVTVS IGATLYKLDD TPSDLLSRAD KALYKAKETG
RNIAIYTS
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