| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3399 |
|---|
| Symbol | |
|---|
| ID | 3966125 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4333679 |
|---|
| End bp | 4335370 |
|---|
| Gene Length | 1692 bp |
|---|
| Protein Length | 563 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637922496 |
|---|
| Product | 2,3-dihydroxybenzoate-AMP ligase |
|---|
| Protein accession | YP_528866 |
|---|
| Protein GI | 90023039 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1021] Peptide arylation enzymes |
|---|
| TIGRFAM ID | [TIGR02275] 2,3-dihydroxybenzoate-AMP ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.795488 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.944936 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGTAAGC AAGCCGTTTC TTCTTCCAGT AATTTATTTA CGCCGTGGCC AGAAGCCGAA
GCAAACCGCT ATCGCACTTT AGGCCTATGG CTTAATAAAA ATATGTTTCA CATTCTAAGC
GACAGTCGCG TAGCAGATAA GCTTGCAGTC ATTGACGATA ACAAACAGCT TACCTACGGC
CAATTAAAAA CTAATAGTTT GGCGTTGGCC CAAGGCCTGT ATCAGTTGGG TATTCGCACG
GGCGATAACG TTGTATTGCA ATTCCCCAAC CGAATTGAAT TTGTAGAAAC ACTGTTTGCT
TTATTTGCGC TAGGAGCCGT GCCCGTAATG GCATTGCCGG CGCATAGAGA GCAAGAGCTG
AAACATTTTT GTACCGAGTC GCAAGCGGTT GCTTATATTT GCGCCGATCA TGCAGGCGGA
TTTGATTACC GTGCGCTGGC ACGCAACGTG TGTGCATTAA CGCAACTCAA GCATGTGTTT
GTAGCCGGCG ATGGGCAAGA GTTTTATTCA CTAGACGATG TAAAACGCGC TGGTGAACTG
GGTGCTAAAA GTAAGGCTTC GTTGCCGGTA GTGGATAACG GCCAAAGCTT AGCGTTACTA
CAGCTTTCTG GTGGTACCAC CAATTTGCCT AAATTAATTC CGCGTACACA CGACGACTAT
TTTTATAGCG TGCGCGAAAG CGCTGCAGTT ACAGGTTTAA CCAACGAATC TGTTTACCTG
TGCGTGCTGC CGGCAGCGCA TAACTTTACT TTAAGTTCTG CTGGCGTATT GGGTGCGCTA
TATGCCGGCG CAACGGTCAT TTTAAGTGAG CAAGTGGCGC CAGATAGGGT GCTGCCTATT
ATCGCCAAAC AGCGTGTTAC TACCGTGGCG CTGGTGCCGC CTTTGGCTAA TGCTTGGCTG
CAGTTTGCAC AAAAAAATAG AGTGGATACC AATAGTTTGC AAGTGGTGCA AGTTGGCGGC
GCAAAATTAA CCAGTGTGCT GGCTAAGCAA ATAGTGGCCA TTTTTAACTG CAAGCTACAG
CAAGTTTTTG GTATGGCCGA AGGTTTAGTT AATTACACCC GTTTACACGA TGGCCCAGAC
AAAACCCTGT TTACCCAAGG GTGCCCGCTT TCGAGTGAAG ACGAAATAAA AGTTGTTGCT
AACGACGATA CGCCAGTGGT TAATGGCGAG GTAGGGCATT TGCTCACCCG CGGGCCTTAC
ACCATTCGCG GCTACTACAA CGCGTCCGAG CACAATGCTA CGGCTTTTAC TCCCGATGGT
TTTTACCGCA CAGGCGACCT AGTGCGGTTA ACCGAAGAGG GTTACGTCGT TGTAGAGGGT
AGGGCAAAAG ACCAAATAAA TCGCGGCGGT GAAAAAATAT CTGCAGCCGA GCTTGAGGAG
TTGCTCGTGG GGCATCCGGG CATATCAGAT GCTGCCGTGG TAGCGATGAA AGATTCCGTA
CTGGGTGAAA AGACCTGTGC ATTTGTAATT AAGAATAAGC AGCAGGCATA CCCACAAGGT
GTTAATGCAA TTTCTAATCA ACAAGCAATA ACGCTACCGG CGCTGCGGCG CTATCTGCGA
GAAATTGGTG TTGCTGAATA TAAGCTACCC GACAGGGTGG TGTGTGTAGA AGTATTTCCA
ACCACCAAGT TCGGCAAGGT TAGTAAAAAA GCCTTGCGCG AAACGCTGGA AAATATTCAG
CAGCTAGCTT GA
|
|---|
| Protein sequence | MCKQAVSSSS NLFTPWPEAE ANRYRTLGLW LNKNMFHILS DSRVADKLAV IDDNKQLTYG
QLKTNSLALA QGLYQLGIRT GDNVVLQFPN RIEFVETLFA LFALGAVPVM ALPAHREQEL
KHFCTESQAV AYICADHAGG FDYRALARNV CALTQLKHVF VAGDGQEFYS LDDVKRAGEL
GAKSKASLPV VDNGQSLALL QLSGGTTNLP KLIPRTHDDY FYSVRESAAV TGLTNESVYL
CVLPAAHNFT LSSAGVLGAL YAGATVILSE QVAPDRVLPI IAKQRVTTVA LVPPLANAWL
QFAQKNRVDT NSLQVVQVGG AKLTSVLAKQ IVAIFNCKLQ QVFGMAEGLV NYTRLHDGPD
KTLFTQGCPL SSEDEIKVVA NDDTPVVNGE VGHLLTRGPY TIRGYYNASE HNATAFTPDG
FYRTGDLVRL TEEGYVVVEG RAKDQINRGG EKISAAELEE LLVGHPGISD AAVVAMKDSV
LGEKTCAFVI KNKQQAYPQG VNAISNQQAI TLPALRRYLR EIGVAEYKLP DRVVCVEVFP
TTKFGKVSKK ALRETLENIQ QLA
|
|---|
| |