Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3387 |
Symbol | |
ID | 3965936 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 4321711 |
End bp | 4322391 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637922484 |
Product | ribose-5-phosphate isomerase A |
Protein accession | YP_528854 |
Protein GI | 90023027 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0120] Ribose 5-phosphate isomerase |
TIGRFAM ID | [TIGR00021] ribose 5-phosphate isomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 48 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.568602 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTCAAG ACGAATTGAA ACAAGCTGTT GCTCAAGCGG CGCTAGACTA TATTTTACCG CACCTAGAAG ACGACATGAT TTTGGGCATA GGTACCGGCT CTACAGCGCG CCTTTTTATC GATTTACTTG CCGCGCACAA GGGCAAGTTT GACGGCGCGG TTTCTAGCTC AGAGGCTTCC AGCGAGCAAT TAAAGGGGCA CGGCATACCC GTTTACGACC TAAACAGCGT AGATAGCCTA CCTTTTTATA TAGATGGTGC CGACGAGGCC AACGCCCAAC TGCACCTTAT TAAAGGCGGT GGCGCGGCCC TTACTCGCGA AAAAATTATT ACCGCCGTAG CCGACAAATT TATCTGCATT GCCGATGCCA GCAAAGATGT AGACGTATTG GGCAAGTTCC CATTACCTGT AGAAGTGATT CCAATGGCGC GCGCGCATGT TGCTAGAGAA ATAGTGAAAT TGGGTGGCAA CCCAGTACAC CGCCAAGATT GCGTTACCGA TAACGGTTGT CAAATACTGG ATGTATACGA CCTCGCCATC CACGACGCAC CAGCACTTGA AGCTAAACTA AATAACATTG CCGGTGTGGT CACCAATGGG CTATTTGCCC TCAGGCCAGC CGATGTATTG CTTTTGGGCA CAACGAACGG GGTAGAAACC CGATTTGCCG CCAAGCCGTA A
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Protein sequence | MTQDELKQAV AQAALDYILP HLEDDMILGI GTGSTARLFI DLLAAHKGKF DGAVSSSEAS SEQLKGHGIP VYDLNSVDSL PFYIDGADEA NAQLHLIKGG GAALTREKII TAVADKFICI ADASKDVDVL GKFPLPVEVI PMARAHVARE IVKLGGNPVH RQDCVTDNGC QILDVYDLAI HDAPALEAKL NNIAGVVTNG LFALRPADVL LLGTTNGVET RFAAKP
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