Gene Sde_3387 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3387 
Symbol 
ID3965936 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp4321711 
End bp4322391 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content50% 
IMG OID637922484 
Productribose-5-phosphate isomerase A 
Protein accessionYP_528854 
Protein GI90023027 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0120] Ribose 5-phosphate isomerase 
TIGRFAM ID[TIGR00021] ribose 5-phosphate isomerase 


Plasmid Coverage information

Num covering plasmid clones48 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.568602 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTCAAG ACGAATTGAA ACAAGCTGTT GCTCAAGCGG CGCTAGACTA TATTTTACCG 
CACCTAGAAG ACGACATGAT TTTGGGCATA GGTACCGGCT CTACAGCGCG CCTTTTTATC
GATTTACTTG CCGCGCACAA GGGCAAGTTT GACGGCGCGG TTTCTAGCTC AGAGGCTTCC
AGCGAGCAAT TAAAGGGGCA CGGCATACCC GTTTACGACC TAAACAGCGT AGATAGCCTA
CCTTTTTATA TAGATGGTGC CGACGAGGCC AACGCCCAAC TGCACCTTAT TAAAGGCGGT
GGCGCGGCCC TTACTCGCGA AAAAATTATT ACCGCCGTAG CCGACAAATT TATCTGCATT
GCCGATGCCA GCAAAGATGT AGACGTATTG GGCAAGTTCC CATTACCTGT AGAAGTGATT
CCAATGGCGC GCGCGCATGT TGCTAGAGAA ATAGTGAAAT TGGGTGGCAA CCCAGTACAC
CGCCAAGATT GCGTTACCGA TAACGGTTGT CAAATACTGG ATGTATACGA CCTCGCCATC
CACGACGCAC CAGCACTTGA AGCTAAACTA AATAACATTG CCGGTGTGGT CACCAATGGG
CTATTTGCCC TCAGGCCAGC CGATGTATTG CTTTTGGGCA CAACGAACGG GGTAGAAACC
CGATTTGCCG CCAAGCCGTA A
 
Protein sequence
MTQDELKQAV AQAALDYILP HLEDDMILGI GTGSTARLFI DLLAAHKGKF DGAVSSSEAS 
SEQLKGHGIP VYDLNSVDSL PFYIDGADEA NAQLHLIKGG GAALTREKII TAVADKFICI
ADASKDVDVL GKFPLPVEVI PMARAHVARE IVKLGGNPVH RQDCVTDNGC QILDVYDLAI
HDAPALEAKL NNIAGVVTNG LFALRPADVL LLGTTNGVET RFAAKP