| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3386 |
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| Symbol | |
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| ID | 3965935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4320030 |
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| End bp | 4321541 |
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| Gene Length | 1512 bp |
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| Protein Length | 503 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637922483 |
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| Product | L-threonine ammonia-lyase |
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| Protein accession | YP_528853 |
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| Protein GI | 90023026 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1171] Threonine dehydratase |
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| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form
[TIGR01127] threonine dehydratase, medium form |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.334671 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCCCAGA CTTACCTTAA ACGCATATTA GATGCGCGAA TATACGATCT AGCCATAGAA
ACCCCACTAG AGTCCGTGCC GCTTATTTCT ATTCGCACAG GCAACAACGT GTTGCTTAAA
CGCGAAGACT TGCAGCCGGT GTTCTCTTTT AAAATTCGCG GTGCCTACAA CAAGTTGCGC
CTATTAAGCG AAGAGGCCAG AAAGGTCGGT GTAATTGCTG CTTCTGCAGG TAACCATGCA
CAAGGTTTGG CTTTGGCTGC TAAGCATATG GGGGTTGCGG CCACTATTGT TATGCCGCGC
ACCACGCCAG CTATTAAGGT AGATGCGGTG CGCCGTCGCG GCGCCAAAGT GGTGCTAATG
GGCGACGCCT ACGACGAAGC TGCAGCCCAT GCTAAAAAAC TGGTGGAAGA GAAAGGCCTT
ACCTATATCC ACCCGTTCGA TGACCCAGAC GTGATCGCGG GCCAAGGCAC AGTGGGTATG
GAGATATTGC GCCAGCACCC CGGCGATATA GATGTGGTGT TTGTACCTGT TGGCGGCGGC
GGCTTATGTG CCGGTGTAGC GGCTTATATC AAGCACGTGC GCCCAGAAAC CAAGGTCATA
GCGGTGGAGG CAGAAGATTC TGCCTGTTTA AAATTGGCAA TGGATAAAAA ACGCCGTGCG
GTGTTGCCCA GTGTGGGTAT TTTTGCCGAG GGCGTGGCTG TGGCGCAAAT AGGTAAAGAA
ACCTACCGCG TAATTAAAGA GTGCATCGAC GAAGTTATAA CCGTTAACAC TGACGAAATG
TGCGCGGCAA TAAAAGATAT ATTCGAAGAT ACCCGCTCTA TTGCCGAGCC TGCGGGCGCG
CTTTCTCTTG CGGGCTTAAA AAAATATGTT GCGCGTACAG GCTGTGTAGA TAAAACGCTA
ATCGCCATTG ATAGCGGCGC CAACACCAAC TTTGACCGTT TACGCTATAT CTCTGAACGC
ACTGAGTTTG GCGAAAAACG CGAAGCTATA TTCGCCGTTA CCCTGCCAGA AAAGCCCGGC
GCCTATAAAA AATTCTGTAA AGATTTGGGC AAGCGCAATA TTACCGAGTT TAATTATCGC
TACGCCGATA ATCAGCAGGC ACACATTTTT GTGGGCTTGC AAATAACGCC CGATAAAAAC
GACCGTGAAG ACATCGTCAA TACGCTTACA AAAGGCGGTT ATGATGTAGT GGATATGACC
GATAACGAAG TGGCCAAGTT GCACGTTCGC TATATGGTGG GCGGCCATGC AACTGTGCCA
GATGAAATTG TGTATCGGTT TGAGTTCCCC GAGCGCCCAG GTGCGCTAAT GGAATTCTTA
ACTAAAATTG CCGGGCGCTG GAATATTTCT ATGTTCCATT ACCGCAACCA CGGTGCGGCG
TTTGGCAGAG TGTTGGTGGG CATGCAGGTG CCTAAGGGCG AGCGCAAAGA CTTAAAAGAT
TTGCTCGACG AACTTAATTA CACCTATTGG GATGAGACCC AAAACGAAGC CTATTCATTT
TTCTTGGGGT AG
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| Protein sequence | MPQTYLKRIL DARIYDLAIE TPLESVPLIS IRTGNNVLLK REDLQPVFSF KIRGAYNKLR
LLSEEARKVG VIAASAGNHA QGLALAAKHM GVAATIVMPR TTPAIKVDAV RRRGAKVVLM
GDAYDEAAAH AKKLVEEKGL TYIHPFDDPD VIAGQGTVGM EILRQHPGDI DVVFVPVGGG
GLCAGVAAYI KHVRPETKVI AVEAEDSACL KLAMDKKRRA VLPSVGIFAE GVAVAQIGKE
TYRVIKECID EVITVNTDEM CAAIKDIFED TRSIAEPAGA LSLAGLKKYV ARTGCVDKTL
IAIDSGANTN FDRLRYISER TEFGEKREAI FAVTLPEKPG AYKKFCKDLG KRNITEFNYR
YADNQQAHIF VGLQITPDKN DREDIVNTLT KGGYDVVDMT DNEVAKLHVR YMVGGHATVP
DEIVYRFEFP ERPGALMEFL TKIAGRWNIS MFHYRNHGAA FGRVLVGMQV PKGERKDLKD
LLDELNYTYW DETQNEAYSF FLG
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