| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3381 |
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| Symbol | |
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| ID | 3965930 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4312100 |
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| End bp | 4314049 |
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| Gene Length | 1950 bp |
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| Protein Length | 649 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637922478 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_528848 |
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| Protein GI | 90023021 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.240721 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGACC AAATTCCGAC GCAGCGCCCG AATACCCCTC TTCTGGATGT CGTAGACACC
CCAGCACGCC TGCGTGAATT AAGCGAAAAG CAACTCCCCC AGCTAGCCAA AGAACTGCGT
GAATATTTGC TGTATACCGT AGGTCAAACC GGCGGCCATT TCGGCGCAGG TTTAGGGGTT
GTAGAGCTAA CCGTCGCTTT GCACTATGTG TTAAACACCC CAGATGACAG GCTAGTATGG
GATGTAGGCC ACCAAACTTA CCCCCATAAA ATTCTTACCG GCCGCCGCGA GCAAATGTCC
AGCATTCGCC AACTAGACGG CCTATCGGGT TTCCCCAAGC GCAGCGAAAG CGAGTTCGAT
ACCTTTGGCG TTGGCCATTC AAGTACGTCG ATAAGCGCAG CCCTAGGCAT GGCACTCGCC
GCCGAAATGA CCGACAACCA GCAACAAACA GTGGCGGTAA TAGGCGACGG CTCCATGACC
GCAGGCATGG CCTTCGAAGC GCTAAACCAC GCCGCGCACG CCGACACCAA TATGATGGTG
ATATTGAACG ACAACAATAT GTCGATCTCT AAAAATGTGG GCGGGCTGGC CAATTACTTC
TCTAAAATTT GGGCAAGTAA AACATACTGC GCCTTGCGCG AGGGTAGTAA GCGCGTACTT
ACCAAAATTC CACAGGCTTG GGAACTCGCT CGAAAAACCG AAGAGCACAT GAAAGGCATG
GTATCCCCGG GTACCCTATT CGAAGAATTG GGGTTTTACT ATGTGGGCCC CATCGACGGC
CACGACTTAG AGCGCTTGGT ACACGATATT CGCAATATGC TCGCCATCCC CGGCCCCAAG
CTGCTGCACA TCATTACTCA AAAGGGCAAG GGTTTTACCC CCGCCGAAAA AGACCCTGTT
GGCTACCACG CACTCAATAA AATAGAGCCT AAAGCCAGCA TCACCCCCAT TAGCGCCAGC
GGCGGCGCTG AAGCCCCCGC AGCTAGCACA ATTAAAAAGC CCAAATACCA AACCGTATTT
GGCGACTGGT TATGCGATCT CGCAGAAGTC GACCCCTTCG TATTAGGTAT TACACCAGCA
ATGTGCGATG GCAGCGGCAT GGTAGAATTT GCCGAGCGCT TCCCCGACCG CTTTCACGAT
GTCGCCATTG CCGAACAACA CGCCGTAACC CTAGCCGCAG GCTTAGCATG TGAAAAATTC
AAACCTGTTG TAGCCATATA TTCCACCTTT TTACAGCGCG CGTACGATCA ACTGGTGCAC
GACGTAGCAT TGCAAAACCT CGATGTTACC TTTGCCATCG ACCGCGCCGG CCTAGTAGGT
GAAGACGGCC CAACACATGC GGGCGCATTC GATATAAGCT TTTTGCGCTG CATACCCAAA
ATAATTATTG CCACGCCTAG CGACGAAAAC GAATGTCGCC AATTGCTGTT TAGCGCTTAC
CACCACCCAG GTGCAGCCGC CGTACGCTAC CCGCGCGGCA CAGGCCCCGG CGCCGTCATC
GAATTAGAAA ACCAGCACTG GCCCATAGGC AAAGGTCGCG AGCTGCGCCA AGGCAAAACC
GTGTGTTTTA TTAATTTTGG TGTGTTACTA CCCGACGCCA TAGCCGTTGC AGAAGCTAAT
AATTACGGCG TATGCGATAT GCGCTGGGCC AAACCGCTAG ATAAAGACCT ACTGCTAAAC
ATGGCAGAGC AATACGATTA CCTAGTAACC CTCGAAGAAA ACGCCGTCGC CGGCGGTGCG
GGTGCAGGCG TAATGGAGCT TCTGGCCGCC GAAGGCATTA GCACCCCAGT ATTGCCACTG
GGCCTACCCG ACGAGTACTT AGACCACGGC AAACGCAGCC AGCTTTTACA AGCCGCCGGC
CTAGACAGAG CGAGCATTAA CCAGCGGATA AATCAATGGC TAAGCCGCCA TAATGGCGCT
GCGCACGATT CGCAAATACA CAGCCTGTAA
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| Protein sequence | MFDQIPTQRP NTPLLDVVDT PARLRELSEK QLPQLAKELR EYLLYTVGQT GGHFGAGLGV
VELTVALHYV LNTPDDRLVW DVGHQTYPHK ILTGRREQMS SIRQLDGLSG FPKRSESEFD
TFGVGHSSTS ISAALGMALA AEMTDNQQQT VAVIGDGSMT AGMAFEALNH AAHADTNMMV
ILNDNNMSIS KNVGGLANYF SKIWASKTYC ALREGSKRVL TKIPQAWELA RKTEEHMKGM
VSPGTLFEEL GFYYVGPIDG HDLERLVHDI RNMLAIPGPK LLHIITQKGK GFTPAEKDPV
GYHALNKIEP KASITPISAS GGAEAPAAST IKKPKYQTVF GDWLCDLAEV DPFVLGITPA
MCDGSGMVEF AERFPDRFHD VAIAEQHAVT LAAGLACEKF KPVVAIYSTF LQRAYDQLVH
DVALQNLDVT FAIDRAGLVG EDGPTHAGAF DISFLRCIPK IIIATPSDEN ECRQLLFSAY
HHPGAAAVRY PRGTGPGAVI ELENQHWPIG KGRELRQGKT VCFINFGVLL PDAIAVAEAN
NYGVCDMRWA KPLDKDLLLN MAEQYDYLVT LEENAVAGGA GAGVMELLAA EGISTPVLPL
GLPDEYLDHG KRSQLLQAAG LDRASINQRI NQWLSRHNGA AHDSQIHSL
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