| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3340 |
|---|
| Symbol | |
|---|
| ID | 3965889 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4268086 |
|---|
| End bp | 4269231 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637922437 |
|---|
| Product | putative rod shape-determining protein RodA |
|---|
| Protein accession | YP_528807 |
|---|
| Protein GI | 90022980 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
|---|
| COG ID | [COG0772] Bacterial cell division membrane protein |
|---|
| TIGRFAM ID | [TIGR02210] rod shape-determining protein RodA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00193411 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0192453 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAAA AGCAGGATTT CGTTCGTCGT ATCCCTGATT CAGCCCACCA CTTTGGCCGC
CCTACGGGGC TGTGGCAGCG CATTCACGTA GACCCGCTAC TGCTTATTAT TTTACTAGTG
CTGTGCTGCT TTGGCTTATT AGTGCTGTAC AGCGGTGGCG GTCAAAGCGA GCATATTGTT
AAGCGTCAGT TAATAGTGTT TGGCGTAGCC TACTCAGTAA TGTTTGTTGT GGCGCAACTA
GACTTGCAAA TGTTGCGGCG CTGGGCGCCG TGGTTATATG TGGCGGGTGT GGGGCTGTTA
GTGCTGGTGT TCTTTTTTGG TGTAGGTGCC AAAGGGGCGC AGCGCTGGTT GAGCTTGGGC
TTTATTCGGT TTCAACCCTC AGAAGTTTTA AAGCTGGGCG TGCCAATAGC AGTGGCTGCG
TTTTTTAGCT CTAAGGTTTT GCCGCCCAAG TTTTTACATA TTTTAGTGTG CTTGGGTATT
ATATCTGTGC CTTTTGTACT TATTTTAAAA CAGCCCGATT TAGGCACCTC AATATTAATT
GCTGCTTCTG GGTTAATTGT TTTATTTTTG GCCGGCTTGC AGTGGCGTTA CATTATTGGC
TGTGTGTTTT TGATTGTAGC CAGTGCGTGG CCAATGTGGA CCTATGTAAT GAAGGATTAC
CAAAAGCAGC GAGTACTTAC GCTGTTTAAC CCAGAGGCCG ATAAGCTCGG GGCCGGTTGG
AATTCTATTC AAGCAAAAAT TGCTATAGGT TCTGGTGGTG TTGATGGTAA AGGCTGGCTG
CACGGCACTC AGTCGCAGTT AGACTTTTTA CCCGAAAGCC ACACCGATTT TATTATCGCT
GTGTTAGCCG AAGAGTTCGG TTTACTTGGC GTTTTATTTT TATTAAGCAT ATATTTGCTG
TTGATAGCGC GCGGCTTATT TATTGCGGCT AGTTCACAAA ATATGTTTAG CCGTTTATTG
GCGGGGAGTA TTACGTTAAC TTTTTTTGTC TACGTATTTG TTAACATCGG AATGGTATCG
GGTATGTTGC CGGTTGTGGG CGTACCATTG CCCCTTGTGA GTTATGGTGG TACATCCATT
GTTACTCTTA TGGCAGGTTT CGGACTGCTA ATGGCAATAG CCACCGAAAA GCGTAAACCC
AGTTAA
|
|---|
| Protein sequence | MSQKQDFVRR IPDSAHHFGR PTGLWQRIHV DPLLLIILLV LCCFGLLVLY SGGGQSEHIV
KRQLIVFGVA YSVMFVVAQL DLQMLRRWAP WLYVAGVGLL VLVFFFGVGA KGAQRWLSLG
FIRFQPSEVL KLGVPIAVAA FFSSKVLPPK FLHILVCLGI ISVPFVLILK QPDLGTSILI
AASGLIVLFL AGLQWRYIIG CVFLIVASAW PMWTYVMKDY QKQRVLTLFN PEADKLGAGW
NSIQAKIAIG SGGVDGKGWL HGTQSQLDFL PESHTDFIIA VLAEEFGLLG VLFLLSIYLL
LIARGLFIAA SSQNMFSRLL AGSITLTFFV YVFVNIGMVS GMLPVVGVPL PLVSYGGTSI
VTLMAGFGLL MAIATEKRKP S
|
|---|
| |