Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3339 |
Symbol | |
ID | 3965888 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 4267002 |
End bp | 4268027 |
Gene Length | 1026 bp |
Protein Length | 341 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637922436 |
Product | Zn-finger, DksA/TraR C4 type |
Protein accession | YP_528806 |
Protein GI | 90022979 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2951] Membrane-bound lytic murein transglycosylase B |
TIGRFAM ID | [TIGR02282] lytic murein transglycosylase B |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.000917071 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0196691 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTTCGA CTTTAAAAAA AGTATTCTCC ACTACCGCTT TAGCGGCAGT GATTACTGCA AGCCCGCTCG CGCTAGCAGA TTATTCCGAG CACCCAGAAG CTAAAGCATT TATTGCCAAA ATGGTAAATG AATACGGCTT GAGCGAAAAA GAAGTGGTGC GCATTTTAAA AGATGCCAAC AAGCAGCAAT CTATTTTGGA TGCTATTGCG CGCCCAGCGG AAAAAACCAA ACCTTGGTTT GAGTACCGCA ATATATTTTT GGGTGAATCT CGAATAACTC AAGGCGTAGA GTTTTGGGCC GAAAACGCCG ATACCCTTGC CAAAGCCAGT AAAGAGTTTG GTGTGCCCGA GCAAATTATT GTGGCTATTA TTGGTGTTGA AACACGCTAC GGGCGCCACG CTGGTAGTTA TCGTGTAATA GACGCTCTTA CTACCTTGGG GTTTGATTAC CCACCGCGGT CCACCTTTTT TGCCAAAGAG CTCGAAAACT TCTTATTGTT GACCACCGAG CAAAAACAAA ACCCGCTAGC GCTAAAAGGC TCTTACGCGG GGGCAATGGG CTACGGCCAG TTTATGCCAA GCAGCTATCG CGCTTACGCA GTAGATTTTG ATGGCGATAA AAAAGCCGAT ATTTGGAACA ACCCCAAAGA CGCCATTGGC AGCGTGGCCA ACTACTTTCG CGCCCACAAA TGGCAAACCG GCGAGCCGGT TATGGTTAGG GCGCGCATTG CTGAGGGCTA CGACGAGTCT ATATTAGATT CGCGCTCACG GCCGTCGCTT ACAGCAACCG AAGTGGCCGC AAAAGGCTTT ACGCCTGTCG ATGTAGAAAT ACCTGGCGAT ACCAAGGTGA TGCCCATTGC TTACGACGGC GAAAAGGGCA AAGAATATTG GCTGGGTTAC GATAACTTTT ACGTTATTAC TCGCTACAAT CGCAGCCATA TGTACGCGCG CGCAGTGTGG GAGCTGAGTG AAGAGATTTT ATATCGCCAT AACAGCCCAG CGCCCGCCTC GGTGGCCACA CCTTAA
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Protein sequence | MFSTLKKVFS TTALAAVITA SPLALADYSE HPEAKAFIAK MVNEYGLSEK EVVRILKDAN KQQSILDAIA RPAEKTKPWF EYRNIFLGES RITQGVEFWA ENADTLAKAS KEFGVPEQII VAIIGVETRY GRHAGSYRVI DALTTLGFDY PPRSTFFAKE LENFLLLTTE QKQNPLALKG SYAGAMGYGQ FMPSSYRAYA VDFDGDKKAD IWNNPKDAIG SVANYFRAHK WQTGEPVMVR ARIAEGYDES ILDSRSRPSL TATEVAAKGF TPVDVEIPGD TKVMPIAYDG EKGKEYWLGY DNFYVITRYN RSHMYARAVW ELSEEILYRH NSPAPASVAT P
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