| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3331 |
|---|
| Symbol | |
|---|
| ID | 3965880 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4258185 |
|---|
| End bp | 4259624 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637922428 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_528798 |
|---|
| Protein GI | 90022971 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00577247 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTGTTA ATACCTTCGA CCCCTCAAAG GCTAGCCCCG TTACCCATGC ATCAGATAGC
GCCAGTAAAA CCCCTGAGCC TAACGCGGTT GCAGCACCAA GCTCCGAGTT AGGCAACAGA
GTCGGGTTTG TATCCTTGGG CTGCCCAAAG GCACTAGTGG ATTCCGAGCG CATTCTTACC
CAGCTTAAGT TGGATGGCTA CGACGTGGTG CCAAGCTATA ACGATGCCGA TGTGGTGGTA
GTTAACACCT GCGGCTTTAT CGATAGCGCC AAGCAAGAGT CCCTCGATGC TATTGGCGAA
GCCATGAAAG AAAACGGCAA GGTGATTGTT ACGGGTTGCA TGGGCAAGGG TAACGATGCC
CAAGTTATTA AAGAAACTTA CCCCAATGTA TTAAGCGTAA CTGGCCCGGC GGCTTACGAA
GAAGTAATGG GGGCTGTGCA CGGTTATATA CCGCCGAAAA AAGAGCACAA CCCACTTATC
GATTTAGTAC CCCCACAGGG TGTAAAACTT ACACCGCGCC ATTACGCCTA TTTAAAAATT
AGCGAAGGCT GTAACCATCG CTGCACATTT TGCATTATTC CAGATATGCG CGGCGACCTA
GTTAGTCGAC CCATCGGTGA TGTATTAGGT GAAGCCGAAC GCTTAGTGGC AGCGGGCACC
AAAGAAATTT TAGTTATTTC ACAAGATACC AGTGCTTACG GCGTAGATGT AAAATACCGC
ACCGGTTTTT GGCAGGGTCG CCCGGTTAAA ACACGCATGC TTGAAATGTG TGAAGCGTTG
GGCGAGTTAG GTGCGTGGGT GCGTTTACAT TATGTGTACC CATACCCGCA TGTAGATAAC
GTAATACCAC TTATGGCTGA AGGCAAAATT CTGCCGTATT TAGATATTCC TTTTCAACAT
GCATCGCCAC AAGTATTAAA AAATATGCGT CGCCCCGCGC ACCAAGAAAA AACTTTAGAG
CGCTTAGCCA AGTGGCGAGA AATGTGCCCA GAGCTTGTAT TGCGTTCTAC ATTTGTTGTT
GGCTTTCCCG GCGAAACAGA ACAAGATTTT CAAATTCTTT TAGATTGGCT GCAAGAAGCA
CAATTAGATC GCGTAGGGTG TTTTGAATAT TCCCCCGTTG AAGGCGCAAA AGCGAACGCA
TTACCCAACC ACGTGCCCGA CGAAGTAAAA CGCGAGCGCT GGGAACGTTT TATGGAAACC
CAGCAAGCTA TTTCGGCAGC CAAGCTCAAA CAAAAAGTCG GCTACGAAAT GGATGTGATA
ATCGACAGTA TCGACGGCGA TATAGCCACC GGCCGCACTT ATGCCGACGC ACCAGAAATT
GATGGTGTAG TTACCTTTAG TGGCGCAGCA GGTATGAAAG TAGGTGAGTT TTCTGCGGTA
GAAATAACCG GGTCGGATGA TTACGATTTG ACTGGTATTG CGGTAGAAGA TGAGCAATAA
|
|---|
| Protein sequence | MTVNTFDPSK ASPVTHASDS ASKTPEPNAV AAPSSELGNR VGFVSLGCPK ALVDSERILT
QLKLDGYDVV PSYNDADVVV VNTCGFIDSA KQESLDAIGE AMKENGKVIV TGCMGKGNDA
QVIKETYPNV LSVTGPAAYE EVMGAVHGYI PPKKEHNPLI DLVPPQGVKL TPRHYAYLKI
SEGCNHRCTF CIIPDMRGDL VSRPIGDVLG EAERLVAAGT KEILVISQDT SAYGVDVKYR
TGFWQGRPVK TRMLEMCEAL GELGAWVRLH YVYPYPHVDN VIPLMAEGKI LPYLDIPFQH
ASPQVLKNMR RPAHQEKTLE RLAKWREMCP ELVLRSTFVV GFPGETEQDF QILLDWLQEA
QLDRVGCFEY SPVEGAKANA LPNHVPDEVK RERWERFMET QQAISAAKLK QKVGYEMDVI
IDSIDGDIAT GRTYADAPEI DGVVTFSGAA GMKVGEFSAV EITGSDDYDL TGIAVEDEQ
|
|---|
| |