| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3325 |
|---|
| Symbol | |
|---|
| ID | 3965874 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4253976 |
|---|
| End bp | 4255238 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637922422 |
|---|
| Product | SelT/selW/selH selenoprotein |
|---|
| Protein accession | YP_528792 |
|---|
| Protein GI | 90022965 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1404] Subtilisin-like serine proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00235928 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGCT CAGTTGCCTT TTTTGCGTGC ATACTTTTTT CATGTGCCAT CTCGGTAAGT
TTTGCGATAG AGCAAGGCTT TGCTGGTAAC TATTTCTCGC CATTCGAAAC AGAGGTTCGT
CTCGAAAACG CTTATTACAA AGTAGAGCAA GCGCAGAGAA TAATTCTTAA AACGGGTGCA
AATACATCTG TGGCCGCTGT GCTAGCTATT TCAAACAACA TTCAAAAAGC GCAGCTTATT
TTTTCTGGCG ATAGTTTTAA CTATTACCTA TTACTGATTG AAAATAGCTT TGACTCTACA
TACCAACAAG TATTAGCTAG CCCTTTAGCA CTGCTCGCGC AGCCAGATAT ATACCTTAAA
AGAACAAATG AACCGTTTGC CACAACGCGG GAGTTAAAGG CCGCGCCAAG TGGTGTCGAA
AAGAATACCG AAAAGAATGC TGAAAAGAGT ACAGATGCAA AACCTGTAAA TTCTAATCAT
TCAGTAATGA ATAACGCTAG GCAAAAGGTA CAACCCGTGA ATATTGCCAT CATAGATGAT
GGAATATTAC TTAAGCATCC TGCGTTGGCG CACATCACCC CACTATTTAG TTATGACGTT
CAATCGCAAA GCTTAGATGC ACAACACAAA ACTAAACTAG ATGGGCATGG TACTCGAATT
GCCGGGGTTC TATTTGCTAA AGACGCAAGC AACCGAGTAA GTGGTATGGC CGCCGATGCC
AACCTAATTG CTATCCGCTC GCCCAGTGGG TGGACGTCCG AAACGTTACT TAGTTTACAG
CTCGCGCAAT TAGCGGGCGC GGACCTAATT AACTGTAGTT GGGATATGGT AGTACTGGTG
GAACCTATTG CCGATGCTAT TCGCCATTTA AGCATGAATG GCCGCGAAGG AAAGGGCACG
GTGGTGGTGT TTTCTGCTGG TAACGATGGT CAGCACATAC ACAAAAGCAT GGTTAATATT
GCTGCCAGCG GAGCGCTGTT GGTGGGGGCG CTAGGTACTT CCGGCGCGCC GCTTGTATCC
AGCAATTACG GTGAAGGCGT AAATGTGTGG GCCAACGGCC AAAAAGTAAT CACGCTCTCT
AAGCGAGGTG GTTACAGTGT CGTTGCGGGC ACTTCATTGG CAGCCGCAAC AACCACCGGC
ATGGCGGCAC AAATAATGGC TGCTGATTCA TCGCTTGATA CTAGTCAAAT TATTGTAGCG
TTAACCAAGA AAGCAGAAAT CGACAAAACA ACTAATAACG GCAAGATAAA TAAAAATGAT
TGA
|
|---|
| Protein sequence | MASSVAFFAC ILFSCAISVS FAIEQGFAGN YFSPFETEVR LENAYYKVEQ AQRIILKTGA
NTSVAAVLAI SNNIQKAQLI FSGDSFNYYL LLIENSFDST YQQVLASPLA LLAQPDIYLK
RTNEPFATTR ELKAAPSGVE KNTEKNAEKS TDAKPVNSNH SVMNNARQKV QPVNIAIIDD
GILLKHPALA HITPLFSYDV QSQSLDAQHK TKLDGHGTRI AGVLFAKDAS NRVSGMAADA
NLIAIRSPSG WTSETLLSLQ LAQLAGADLI NCSWDMVVLV EPIADAIRHL SMNGREGKGT
VVVFSAGNDG QHIHKSMVNI AASGALLVGA LGTSGAPLVS SNYGEGVNVW ANGQKVITLS
KRGGYSVVAG TSLAAATTTG MAAQIMAADS SLDTSQIIVA LTKKAEIDKT TNNGKINKND
|
|---|
| |