| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3324 |
|---|
| Symbol | |
|---|
| ID | 3965873 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4252754 |
|---|
| End bp | 4253983 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637922421 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_528791 |
|---|
| Protein GI | 90022964 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03032] conserved hypothetical protein TIGR03032 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00237528 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAAT CACCCGATGA GCAAACAAAC ACTTTTGATT TTACTTGTGA ATATTCCAGT
AACTTACCCG AGTTGCTTAG CGCACTAAAT ATATCCATTG CGTTTACTTC GTACCAAGCT
GGTCGCTTGA TGGTGGTAAG AAGCGACGAA AAAAGTATTG ATGTGAATTA TAAAAATTTT
CCCCGCCCAA TGGGGTTATG CAGCACCGAA AGTGGGTTAA CTCTGGGTAC CTTTGCCCAA
ATTATCAATT TCCATCGAGC CGATAATCTT ATCGATCAAT TAAAGGCCCC TCTGCCTTCT
ATTCAAGATG ATATTACAGC CCCGCGTATT CACCCTAAAG AGCAGGAAGG GGGCGATAGT
GCAGGTGCGC TCGAGGTAAT GAGCGAGTTA GATAGTGAAC AAGAAGAACG GCACTCAGAA
CAGCTTAGAC TGCAGCAAGA GCGACAGAAA AAATTACACG AAGGCGTCGA CCCGCGTGTA
GACAGTTGTT TTATTACGCG CTCCAGCCAC TACACCGGCA TGATCAATCT ACATGATATT
GATTGGGGGG ATGAAGGGCT ATGGGTTGTT AACTCCAGCT TCTCGTGCCT GTGCACGCTA
GACCCAGATT ACAGCTTTGT ACCGCGCTGG AAGCCACATT TTATTACCGC CCTAGTGCCA
GAAGACCGCT GCCACTTAAA TGGCATGACC TTAAAAGACG GAAAGCCCGC CTACGTAACC
ACGTTTTCTA CCTTCGATGA GCCGGGGTTG TGGCGAAAGG GCGATAAATT TAATGGCACG
CTAATGAGCG TAGATGGCAA CGAAATACTC ATTCGCAATT TAGTTATGCC ACATTCGCCG
CGCTTTTATC AAGATAGCGT CTATTATTGT AATTCGGGCC TTGGGCTTTT TTGTAAATAT
AACCCTCGTA CGGGTGATGA AGAGATAATT GCCGAGCTAC AGGGTTTCAC TCGCGGTGTC
GACTTTTATG GCTCACTTGC GTTTGTTGGG TTATCTAAGG TACGTGCGGG CAACGTATTA
CATGCGCCGC CCCTAGCTAC AAAATACGAT GAAACATTTT CTGGGATATG GCTCATCGAT
TTAAGCACCA ATAGCACTAT TGGTTATATT AAATTTACCG GCAACGTCGA CCAAATTTAC
GATATTGCCG TTATACCTAA TTGTAAGTTC CCAGAGATTT TGGAGCCGTC GCATCCGCGA
ATGCGCAACC ATTTTTGTAT TCCACTATAA
|
|---|
| Protein sequence | MIESPDEQTN TFDFTCEYSS NLPELLSALN ISIAFTSYQA GRLMVVRSDE KSIDVNYKNF
PRPMGLCSTE SGLTLGTFAQ IINFHRADNL IDQLKAPLPS IQDDITAPRI HPKEQEGGDS
AGALEVMSEL DSEQEERHSE QLRLQQERQK KLHEGVDPRV DSCFITRSSH YTGMINLHDI
DWGDEGLWVV NSSFSCLCTL DPDYSFVPRW KPHFITALVP EDRCHLNGMT LKDGKPAYVT
TFSTFDEPGL WRKGDKFNGT LMSVDGNEIL IRNLVMPHSP RFYQDSVYYC NSGLGLFCKY
NPRTGDEEII AELQGFTRGV DFYGSLAFVG LSKVRAGNVL HAPPLATKYD ETFSGIWLID
LSTNSTIGYI KFTGNVDQIY DIAVIPNCKF PEILEPSHPR MRNHFCIPL
|
|---|
| |