| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3322 |
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| Symbol | |
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| ID | 3965871 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4240777 |
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| End bp | 4242039 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637922419 |
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| Product | RNA polymerase ECF-subfamily sigma-70 factor |
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| Protein accession | YP_528789 |
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| Protein GI | 90022962 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000453852 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCATTCTC AAGAAACCTC ATCACCGTTT GAAGATGACC TTCCTGCTTT AATTGACGCC
ATATATCGCG CGGAGTCTCG CCGTATATAC GCCACGCTTA TTCGGCTAAT AGGAGACATG
CAATTGGCAG AAGAGGCTAT GCACGACGCC TTTCATGTCG CCTTGAGTCA ATGGCAGGAT
AAAGGCATAC CGGATAATCC GCGTGCTTGG TTGGTATCTA CCGCCCGCTT TAAGGCTATC
GACCAGTTGC GGCGGCAAAC TCATTTAGCT GAGACTCTAG AGGCTATTAC GCCCCTTAGC
GACAGTGAAG CGCTGGATTG GGATGGCGAT ATTATTGAGG ATGATCAACT TCGCTTGATT
TTTACCTGCT GCCATCCCGC GCTAGACCCC AAGTTACAAA TCCCGCTCAC TTTAAGAGAG
GTGTGTGGCC TAACCACTGA AGAGATCGCT AGTGCGTATT TAGTAACCCC ATCGACAATG
GCACAGCGTA TTGTTCGAGG AAAGGCCAAG ATTCGTGATT CAAAACTTCC CTTCGAAATT
CCTGAACGCT CGCAGTTGGC GCAGCGCTTA GATGCAGTAC TAGCTGTTGT GTATCTTCTG
TTTAATGAAG GCTACTCGGC CACTAAAGGT GATACTTTGC TTAGAGTGGA GCTGTCATCA
GAAGCGATTC GATTATCGCG GCAGTTGCTG GAGCTAATGC AAGATAGCGA GATAGAAGGT
CTGCTTGCAC TTATGCTGCT GCATCAGTCA CGTAGTGCCA GTAGAACAAA TTCTGCTGGT
GATATTATTT TGCTAGAGGA TCAAGACCGA AGTCTATGGG CGAAAGACTT GATAGATGAG
GGACGATTTA GAGTCGGCCG CGCTTTCGTT CTCGGGTCGG TGGGGTTCTA TACTTTACAG
GCGGCTATTT CAGCTTGCCA TGCACAGGCG CCCACTTGGT TGGAAACTGA CTGGCAACAG
ATTGTTCAGC TGTATGAGGC TCTGTCGCAG GTCGACCCAT CTCCTATCGT GGAGCTCAAC
AAAGCAGTCG CAGTCTCAAT GCTTGAAGGG GCAGAAGCTG GGTTGAAGAT CATTACACAA
TTGATCCGCG GTCAAGAGTT GGAGCAGTAT CACTTGCTCC ACGCTGCTCA CGGCGAATTG
CTGAGCCGAA CTGGGGAACT AATGGGCGCT CGTTCGGCTT TTGAGCGAGC GTTGTCGCTA
ACGAATCAGG AGGCCGAGCG ACGGGTGTTA AAACTAAAGA TGAGTAGGCT CGACGCCATT
TAA
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| Protein sequence | MHSQETSSPF EDDLPALIDA IYRAESRRIY ATLIRLIGDM QLAEEAMHDA FHVALSQWQD
KGIPDNPRAW LVSTARFKAI DQLRRQTHLA ETLEAITPLS DSEALDWDGD IIEDDQLRLI
FTCCHPALDP KLQIPLTLRE VCGLTTEEIA SAYLVTPSTM AQRIVRGKAK IRDSKLPFEI
PERSQLAQRL DAVLAVVYLL FNEGYSATKG DTLLRVELSS EAIRLSRQLL ELMQDSEIEG
LLALMLLHQS RSASRTNSAG DIILLEDQDR SLWAKDLIDE GRFRVGRAFV LGSVGFYTLQ
AAISACHAQA PTWLETDWQQ IVQLYEALSQ VDPSPIVELN KAVAVSMLEG AEAGLKIITQ
LIRGQELEQY HLLHAAHGEL LSRTGELMGA RSAFERALSL TNQEAERRVL KLKMSRLDAI
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