| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3318 |
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| Symbol | |
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| ID | 3965867 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4235684 |
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| End bp | 4238548 |
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| Gene Length | 2865 bp |
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| Protein Length | 954 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637922415 |
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| Product | Outer membrane receptor proteins mostly Fe transport-like |
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| Protein accession | YP_528785 |
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| Protein GI | 90022958 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor
[TIGR03304] outer membrane insertion C-terminal signal |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0120017 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000382692 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTTTAAAC CTTCAAAACT CAGTACTGCA ATTGCCACGT CGGTTGCATT ACTTAGCTCG
GTTGCCTTTG CGCAAGAAAG CGAAACAGAG CAAGACTACG AAGAAGTTAT CGTTACAGGT
ATTCGCGCAA GTTTATCTAA AGCAATAGAC ATTAAACGTA ACGAAGTACA AGTAATAGAA
TCAATTGTTG CAGAAGATAT TGGTAAGTTT CCAGATAACA ACGTAGTAGA AGCATTACAG
CGCGTACCCG GCATTCAAGT TACCGATCGC GCGTCGGGTG AAGTTAACGG TATCTCTATT
CGTGGCTTAA CGGATGTAAC TACCACCATT AATGGCCGCC AAATGTATAT TTCTAACGGC
CGCTTCTACA CCATGGCAGA CACGCCTGCG AGTTTGATTT CACGTGTAGA TGTATACAAA
ACGCGCTCAG CCGATAAAGT ACCCAGCGGT ATAGCGGGCC AAGTAGACGT TCACACCCAA
CGGCCATTTA ATTTTGACGG CTCTAAGGTT GTAATTAATG CGCGCGGTAT TTATCAAGAC
CAAGAAGGCA AATTCGACCC CAATATAGGA GCGCTAATTA GCAACCGCTG GGATTTTAAT
TTTGGTGAAA TTGGTGCGCT TTTAAACGTT GCCACTGCTA CCACAAACTT TCGAGACCAA
TCGATTACTT CTGGTGCTGC GTTCCCATAC TTTACCTCAG ACCCTAGCGG CCCAGAAGCG
CAACCTTTCG CGCGAATCGG CTCTGGCTGG GAGCCAGGGC TAGAAGCAGG CTTGCCTTTT
GCAGCTGGCT CCACATTAAT AGTAAATGGC GTTGAAGAAG AATATATTTT ATCGCGCGAC
GCAATGTTTG CGTCGGATTT TTCAGGCGAA CGCGAACGCC CTGCTGCCAA TATAGCGGTA
CAATTCGCAC CTAACGAAAC ATCAGAATAC ACCTTTGAAG CCTTCTACAA CGGTTACCGC
CAACAAGACT TCAACAGCTT GTTTTTTAGC TTTGTGGATT CCACTTACAA CCTAGACTTT
AACGATGACA TTTTATTGTA TGAAGGTACA AACATTGTAA AAGAGCGAAC GGTTTACGGC
GCTCCGGATA CCTATCCCAA CTTCCACAGT GGCGACGCTT CCATCCGTCA AACAGACAGC
TATCTGTACG CTATTGGCGG CGAGTGGGAT ATAGGCGATA ACTTCCACTT ATCTGCAGAG
GCCTATACAC AAAAAAGTGT ATTCAAAAGC GAGTTTTTTG CCATCCGTTT AAATCACGGT
TACTACGCTA TGGATGTAGA TTTTAACAGT GGCGACGGTG TTCCCGCTTT AACCTATATC
GATAATCCCA ACACAGCTGA TGTTAATGAA GCAGACTTAA CCGACGCATC GCAATTTGCG
TGGGGACCAG CGTGGGATAA CGGTGCAAGA GATGAAGGTG GTGCAGATAC GTTAAAAATC
GATGCCAACT GGGACTTAGA CTTTGCCGGT ATTACTAAAG TAGACTTTGG TTTACTTTAC
GAAGTTCGCA CTGCTAATTC TGCGGGAAGA GGCTCTAACG TAAGCACACC AGTGCAAGAT
ATTGCCGTAG ACGAAATCCC CGAAGGCTTT CTAACAACCA CGAGTGATTT CTTTGATGGC
CGCGCAGATT TCCCTTCAGA GTGGGGTATT GCCGATGGTA ACTACATGTT TGCCAATCGC
GATTACTTCC GCAATTTATA CGGTTTTTAC AGCGAAGAAA ATGACAATTA CCTAGGTGGC
GGCAACTACT TAACATTGCA AAAAACATTT GACGCAGAAG AAACCACCGC CGACGCATAT
ATCCAGGCTA GCTTTGAATA TGAAGTAGGT GTAGGCGTAA TAGACGGTAC TATTGGTATT
CGCTATACCG ATGGCACTAC CGATATTAAC TTCGTACGCT TGGTTAATAG CGCTACTGCA
GGCCCAGAAG ATAATTTCGA AGAAGGCGAC GTTCCTTATT CCACCGTCGA AGCGACGCAA
AACAGCAGCG CTAAATTGTT GCCTAGTATT GTTGTACGTT ATAACTTCCT CGATGATTAT
ATGGCGCGCT TTGCATACAC GGAAACCATT CGCCGCCCGG ACTTTGGCGC CCTTAACCCG
TTTATTACCT ACAATAAAGA CGTAACGAAT ATAGGTTACG GTACTGCAGG TGGCGGTAAC
CCTAACTTGG AACCAGTTGT ATCTAAAAAC TTAGATTTCT CTTTAGAGTA TTACTTCAGT
GATGGCAACG CGATATACGG CACAATATTC AGTCGTGATA TAGAAGGTTT AATTGTGGGT
TCGCAGTCTG AAATTTACTA CGACTACCCC GATGATGATC TAGATTCATA CCGCCATATA
CTTAGCCTGC CAGATAACTC GGCAAACGGT GAATTAACAG GTATTGAATT GGGCTTAGTG
TACTTCCCAG AAAACTTGCC AGGTGCGCTA GACGGCTTAG GTATCCAAGC GAGCTATACC
GCATTAGATT CATCACAGGA CAACCCTGTT TACAACGATG ACGGCAGCTT AGCCGGCTAT
CAAGAATCCG AGATGTTTGG TGTTTCCGAC AGTTCCCTAA GTACAGTACT TGCCTACGAA
AAAGATAATT TTGGCGCTCG CCTATCGTAT GTTTGGCGCG ACGCGTTCCG TCAAAGAAAC
GAAGCAACCC TGTTCGCAAA CCCTCTGCCC ATATATCGCA GAGCAGAAAC CAGTGTCGAT
TTCCAACTAT CTTACGATGT AACCGACGAT TTCGTTATTA CCTTTGATGC AACCAACCTA
ACGGATGAAA AGTATCAAGA GTACTACGAA CATCAAGACA TCTATAACTT CTACTCCGGC
ATCTACAGCC GCACCTATGC ACTAGGCGCG CGCTATTCGT TCTAG
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| Protein sequence | MFKPSKLSTA IATSVALLSS VAFAQESETE QDYEEVIVTG IRASLSKAID IKRNEVQVIE
SIVAEDIGKF PDNNVVEALQ RVPGIQVTDR ASGEVNGISI RGLTDVTTTI NGRQMYISNG
RFYTMADTPA SLISRVDVYK TRSADKVPSG IAGQVDVHTQ RPFNFDGSKV VINARGIYQD
QEGKFDPNIG ALISNRWDFN FGEIGALLNV ATATTNFRDQ SITSGAAFPY FTSDPSGPEA
QPFARIGSGW EPGLEAGLPF AAGSTLIVNG VEEEYILSRD AMFASDFSGE RERPAANIAV
QFAPNETSEY TFEAFYNGYR QQDFNSLFFS FVDSTYNLDF NDDILLYEGT NIVKERTVYG
APDTYPNFHS GDASIRQTDS YLYAIGGEWD IGDNFHLSAE AYTQKSVFKS EFFAIRLNHG
YYAMDVDFNS GDGVPALTYI DNPNTADVNE ADLTDASQFA WGPAWDNGAR DEGGADTLKI
DANWDLDFAG ITKVDFGLLY EVRTANSAGR GSNVSTPVQD IAVDEIPEGF LTTTSDFFDG
RADFPSEWGI ADGNYMFANR DYFRNLYGFY SEENDNYLGG GNYLTLQKTF DAEETTADAY
IQASFEYEVG VGVIDGTIGI RYTDGTTDIN FVRLVNSATA GPEDNFEEGD VPYSTVEATQ
NSSAKLLPSI VVRYNFLDDY MARFAYTETI RRPDFGALNP FITYNKDVTN IGYGTAGGGN
PNLEPVVSKN LDFSLEYYFS DGNAIYGTIF SRDIEGLIVG SQSEIYYDYP DDDLDSYRHI
LSLPDNSANG ELTGIELGLV YFPENLPGAL DGLGIQASYT ALDSSQDNPV YNDDGSLAGY
QESEMFGVSD SSLSTVLAYE KDNFGARLSY VWRDAFRQRN EATLFANPLP IYRRAETSVD
FQLSYDVTDD FVITFDATNL TDEKYQEYYE HQDIYNFYSG IYSRTYALGA RYSF
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