| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3316 |
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| Symbol | |
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| ID | 3965865 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4229759 |
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| End bp | 4231504 |
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| Gene Length | 1746 bp |
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| Protein Length | 581 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637922413 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_528783 |
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| Protein GI | 90022956 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0367023 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000158702 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCAAAAA CTAACCCTCC ATCACTAGCC AGTCGCGCAA GCTTGCACGG TGGTTTAGCG
TTTGAATTCG ACTTTCCCAG TGCCTCGTTA GAAGTGCTTG CGGGTAAAAT GCCCGCTTTA
ATGGCACTGG CTACTACAGA AGGGGCGCTA ATCTTCTCCA ATGGCCATTT TGAATTGCTA
GATGGAGCTG GGGATACGGT TGAGAGTGAT ACTGAGGCCG GCTTGTTCCC TGCGCCTTTA
CGTCTCTCGC TAACTAAACA AGCCAACCCT CACGATACTG TTTTTATGCA AGCGCTGCGT
TATTTAGACG GCAGCGAGCA CATCTATGAA ATACACCGCT TTAAAGTGCC AGCAGTAGAA
GAGGGGCGCA CCGAGCTTAT TTGTACGCTT GGGGTTTGCC AAACTTCCCC CACCAATACT
TCACCCCCGC AATTTGACCC GTTAACCGGC TTGGCTAATC GCGCGCAGTT GTATGAACAG
TTACGCCGAG CCATAGATTA CGGCCGTGTG CATCGCGAGT GCGTAACGGT GATGATGCTG
AATATTGATC GTTTTAAAAA TATAAACGAT AGCTTAGGTG TGGGTGCCGG CGACGATGTG
CTAATTCAAA TATCTGAAAT ATTGCGCAAT GTATTGCGTG ATAACGACAC CGTAGCCCGC
TTGGGTAGCG ATGAATTTAT TTTGCTGTTA GATAAGGTGG ATAACCCTCA TCACATAACC
AAAATTGCAG ATAAAATTTT AAACGCTATT GGTCAGCCGT TAAATATTTG CGGTCACGAA
ATTACCTGTA CCGCAAGCTT GGGGGTAAGT CAGTTTCCTA TTCATGGCGA CTCAATCGAT
TTGCTGCTTA AGCACGCCGA TGAAGCCATG GCGCGAGCAA AAAGCGAAGG TAAAAATCGC
TATAAAATTT ATACCGCACA AATGAGCGAG CGCACAGTCG ATGCCCTGCT AATGGAAAAC
GATTTGCGTC GCGCACTAGA GCAAGATGAA TTTATTTTGT TTTATCAGCC GCAGGTACAT
TTGCGCACTG GCAAAATTAT TGGGCTAGAG GCACTTATTC GCTGGCAGCA TAAAACTAAG
GGCGTTATTT CGCCGTTAGA TTTTATTCCA CTAGCAGAAG AAACAGGTTT AATCGAAGAG
GTGGGTGCAT GGGTGCTTGC TCATGCTTGT GAACGTTTTC ATCACTGGTT AAAGCAGGGG
TTGAGTTTAG GTAAGGTGGC AGTGAACTTA TCGGCACGTC AATTTAGGCA AGCCCACTTT
GCCGAAACGG TAGTAGAGGC GTTAAATAAA AGTAAACTTC CTCCGCAATA TTTAGAGCTG
GAAATAACCG AAAGCCTAAC TATGCAAGAT ACCGACGAGG TGTTGCAAAC GCTGGGCTAT
CTAAATAAGT TAGGGCTTTC TATTGCTATT GATGATTTTG GTACTGGCTA TTCTTCTTTA
TCCTACCTTA AAAAATTCCC TGTAAATAAA TTGAAAATAG ACCGCACATT TATTCACGAC
GTGGGTTCCG AGCTAGACGA TGGCGCTATC GCCAAATCGA TTATCGACCT TGCTCATAAT
ATGTCTATGC TTGTAGTAGC AGAGGGCGTA GAGCGCTTAG GGCAATCTCG CTGGTTGTAC
GATCAAGGTT GTGATCAAGT GCAGGGCTAT TATTTTTGCA AACCCCTCAG TGAAAATGAA
CTGTTAAAGC TGCTCTATAG TGAAAAAGTA TTTAGAGATA GTAATGGCGA TTGTTTTATT
GTTTAG
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| Protein sequence | MPKTNPPSLA SRASLHGGLA FEFDFPSASL EVLAGKMPAL MALATTEGAL IFSNGHFELL
DGAGDTVESD TEAGLFPAPL RLSLTKQANP HDTVFMQALR YLDGSEHIYE IHRFKVPAVE
EGRTELICTL GVCQTSPTNT SPPQFDPLTG LANRAQLYEQ LRRAIDYGRV HRECVTVMML
NIDRFKNIND SLGVGAGDDV LIQISEILRN VLRDNDTVAR LGSDEFILLL DKVDNPHHIT
KIADKILNAI GQPLNICGHE ITCTASLGVS QFPIHGDSID LLLKHADEAM ARAKSEGKNR
YKIYTAQMSE RTVDALLMEN DLRRALEQDE FILFYQPQVH LRTGKIIGLE ALIRWQHKTK
GVISPLDFIP LAEETGLIEE VGAWVLAHAC ERFHHWLKQG LSLGKVAVNL SARQFRQAHF
AETVVEALNK SKLPPQYLEL EITESLTMQD TDEVLQTLGY LNKLGLSIAI DDFGTGYSSL
SYLKKFPVNK LKIDRTFIHD VGSELDDGAI AKSIIDLAHN MSMLVVAEGV ERLGQSRWLY
DQGCDQVQGY YFCKPLSENE LLKLLYSEKV FRDSNGDCFI V
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