| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3313 |
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| Symbol | |
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| ID | 3965862 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4225867 |
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| End bp | 4227771 |
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| Gene Length | 1905 bp |
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| Protein Length | 634 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637922410 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_528780 |
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| Protein GI | 90022953 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.829477 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00315357 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAGATCC CGTCAAAACT GGCTCTTCCT ATTGGATTTA TTGCTTTTTA TTGTATTGGT
TTAACGCTGT TCGGTTGGGC CAACTACACA ACTCATTTTC AAACTCTGCT AGATCATGCA
GACCAAAAGC TCGCCCTAGC GGCAACGGCT AGCGACAGGC TATTACCCGC GAAGCTACAC
AGCGCTCCAC TAGTGCAACA TATGTCGCGT GCCGAAGAAG AAGCAATAGC CAAAACCCTC
ACAAGCTTTG CGCAAGAAAT GCAGCTTGCC TACGTTTACA CCCTAGTACA ACACCAAGGC
AAACTGCGAT TCACAAGCTC GAGCGCAGCG CCAGGAGAGT TTGAAAGCAA ACAGTACAAG
CTTATATACT GGAGCGAATA CGACGATGCC AGCCCTCAAA TTAATAAGGC GATACAAACC
TTAAAGCCAA CCAGCGCAGA ATATACCGAC CAATGGGGGT CTTTCCGCTC GTATTTTTTA
CCGCGCATAG CCGAAGACGG TACGGTATAC ATAGTGGGCG CAGATTTAGA TATTTCTGCA
GTACATGCAC TGGCAATGGA AAGCATGCAA CGCGCTGTGG CGAATGGTGT ATTGCTTACC
ATTTTATGCT TGCCCTTTAT TTTAATTGCC CGACGTAATT TTTTAGCAAA TATCGCCCTG
CGCGAGCAGG CATACTTTAA AGATCCGCTC ACACACTTAC CAAACAAAAA TCAATTAGAG
AAAGACCTTG CCACCTGCTT TCACCCTCAT TTAGTAATGC TAAATATCGA TCGATTTTAT
TACGTTACTA GCTCTTATGG ACAAGCCTTT GGCAATATGC TGCTGTGCGA GTTTGCCTAC
AACCTTGCCA ATTACACCCA CCCTTCACTT AAAAATATGC GCGTTTATCA TATTCACAAC
GATGAGTTCG CGGTACTTGT TGATCAGCAC TTTCATAACG AGCAAAACCT ACACGTTTTT
AACGACTTTT ATAACTGTGT AAGCCAAACC CAATATCGCA TGCCAGACGG CAACATGATT
GCTTTGGATT TGCATATTGG TGTTACCGCA GAACTGGACG ACCCTTTGGA GCTAGCTCAG
CTCGCATTGC GCAAAGCCCA AGAAACCAAC ACCAGTATTA TTTTTTACAA TTCGACAGAA
TCTCTACCAG AAAGCTACCT GAGCAATATT AAAAAAATAC AGCTAATAAA AGACAGTTTC
GAAAACAACC GTGTAATAGC TTATTTTCAC CCCATTGTGG ATGCACGCAC TGGCAATATA
GAAAAATACG AAGTACTGAG CCGAATAGTC GATGACGCGG GGAAAGTAAT AATGCTGCCC
GATGAGTTTG TTCCACTTAT GCAGCGCTCG CGCAACTACG GCCTACTTAC CTTAAGCATG
CTGCAGCAAG CTATAGACAT ATCCCGCGTA GAAAAAGTCG AGCTCTCTAT TAATTTTTCT
ACCCACGACA TTATCGACCC AGAGCTGGCA AATAAAATTG TCAAATTAGT ATCTCAATCT
GGTATTGCTA AACAACTGCA TTTTGAACTT TTGGAAACCG ACAGTTTGGT AGACGAGAAA
AGCCTAAGCC AATTTATAAT GCGTTTAAAA AGGCTAGGCT GCCGAGTAGG GCTTGATGAC
TTAGGCAAAG CTTACTCCAA TTTCGACAGA CTAATGTCTC TACCCATAGA CTTTGTGAAA
ATTGACCGAG GGGTAATGGC ACGCTTAGAG CAAGATACCG ATGCACAGGA AATTACCCAA
AAAATAGTGC AGTTTGCACG CACCAAAAAA ATTACAACGG TTGCCGAATA TTGCTACACC
CCAGAAGTGT GCAGGCTTGC AGCAAATTTG GGCATAGACT ACCTACAAGG CCACTGGCTG
GCAGAGCCAG AAGCACACAT TAACCGCAAG GTGAGAGCCT TTTAG
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| Protein sequence | MQIPSKLALP IGFIAFYCIG LTLFGWANYT THFQTLLDHA DQKLALAATA SDRLLPAKLH
SAPLVQHMSR AEEEAIAKTL TSFAQEMQLA YVYTLVQHQG KLRFTSSSAA PGEFESKQYK
LIYWSEYDDA SPQINKAIQT LKPTSAEYTD QWGSFRSYFL PRIAEDGTVY IVGADLDISA
VHALAMESMQ RAVANGVLLT ILCLPFILIA RRNFLANIAL REQAYFKDPL THLPNKNQLE
KDLATCFHPH LVMLNIDRFY YVTSSYGQAF GNMLLCEFAY NLANYTHPSL KNMRVYHIHN
DEFAVLVDQH FHNEQNLHVF NDFYNCVSQT QYRMPDGNMI ALDLHIGVTA ELDDPLELAQ
LALRKAQETN TSIIFYNSTE SLPESYLSNI KKIQLIKDSF ENNRVIAYFH PIVDARTGNI
EKYEVLSRIV DDAGKVIMLP DEFVPLMQRS RNYGLLTLSM LQQAIDISRV EKVELSINFS
THDIIDPELA NKIVKLVSQS GIAKQLHFEL LETDSLVDEK SLSQFIMRLK RLGCRVGLDD
LGKAYSNFDR LMSLPIDFVK IDRGVMARLE QDTDAQEITQ KIVQFARTKK ITTVAEYCYT
PEVCRLAANL GIDYLQGHWL AEPEAHINRK VRAF
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