Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3287 |
Symbol | |
ID | 3965779 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 4199547 |
End bp | 4200317 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637922384 |
Product | GntR family transcriptional regulator |
Protein accession | YP_528754 |
Protein GI | 90022927 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.0416745 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.920841 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACCGG AAATAGGCAA CGCTCCTCAG CGTACGTACC GCAAGGTAGT CGAAAAGATG CTCTCATCGT TAAACGCTGG GGAGTACCCA TCTGGTGCCC GTTTACCACC TGAACGCGAA CTCTCCGAAC GCTTTGGCGT TAGTCGACCA ACCATTCGCG AAGCCATTAT TGCGTTAGAG GTAATGGGCC GCGTTGAAGT GCGTACAGGC TCTGGCGTCT ATGTGCTTAA AAACTTTAAG CCTGCCACCA GTAATGAATA CGAGTACAGC CCCTTCGAGT TAACCGAAAC ACGCGTATTA GTTGAGGCAG AAGTTGCCGC GCTGGCCGCT TCCACCATTA CCGATGAGCA ACTTGCAGAC TTAGAAGGCG CCCTGCAAGA AATGGCGCAA GAGAACGAAA TAGGCAACTT AACGTCTGAA GTAGCCGATA AGAAGTTCCA CGCGATAATC GCCAACTCGA CTCAAAACAG ACCGCTAATT AACATTATTG AGCGCCTGTG GGATATTCAA GCTAACTTGC CAGACATTCA ATACGCGCAC AATGCGATTT GTAAGAAAGA CGGGCAACGC CGCTTAGAAG AGCACCGCGC AATATTTGAT GCGCTAGCAG AGCACGACTC GCAGAAGGCC CGCATAGCTA TGCGCGCGCA CTTTACTCGC TCACTTGAAG CGCTGCACGC CACTACCGAA GCCCGCGCAG TAGAAGAAAT TCAAAAGCAA CTTACCCAGC GTCGCGAGCG CTTCTCTTTA GCCCGCCTAG ACTTAGGTTA A
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Protein sequence | MKPEIGNAPQ RTYRKVVEKM LSSLNAGEYP SGARLPPERE LSERFGVSRP TIREAIIALE VMGRVEVRTG SGVYVLKNFK PATSNEYEYS PFELTETRVL VEAEVAALAA STITDEQLAD LEGALQEMAQ ENEIGNLTSE VADKKFHAII ANSTQNRPLI NIIERLWDIQ ANLPDIQYAH NAICKKDGQR RLEEHRAIFD ALAEHDSQKA RIAMRAHFTR SLEALHATTE ARAVEEIQKQ LTQRRERFSL ARLDLG
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