| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3284 |
|---|
| Symbol | |
|---|
| ID | 3965776 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 4193326 |
|---|
| End bp | 4195536 |
|---|
| Gene Length | 2211 bp |
|---|
| Protein Length | 736 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637922381 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_528751 |
|---|
| Protein GI | 90022924 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.924939 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.314545 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAGCG TTAATACTAT TAAAAACACC TTGCTGGCAG CAGTGCTTGT TTCTGTGCCT
GCAACTGCTC AAGTTTCTGG CAATGGTCAT CCGAATCTTA TTGTTACAGA GCAAGACGTA
GCAAACATAG CTGCTAGCTG GGAGTCTTAT GATGCATATG CCGAGCAATT AAATGCCGAC
AAGACCAACC TCGACGCATT TATGGCTGAA GGTGTTGTTG TGCCTATGCC TAAAGATGCT
GGCGGCGGTT ATACCCACGA GCAACACAAG CGCAACTATA AAGCTATTCG CAATGCCGGC
TTTTTGTATC AGGTAACGGG TGACGAAAAA TATTTAACGT TCGCCAAAGA CTTGTTGCTA
GCCTACGCCA AAATGTACCC ATCGCTAGGT GAGCACCCCA ATCGCAAAGA GCAGTCGCCT
GGTCGATTGT TTTGGCAAAG CCTAAATGAA GCTGTTTGGT TGGTTTATAG CATACAAGGC
TACGACGCCA TAATAGACGG CCTAGCCGCA GAAGAAAAAC AAGAAATTGA GTCGGGTGTT
TTTCTGCCCA TGGCTAAATT TCTTTCTGTA GAGTCACCTG AAACATTCAA CAAGATTCAC
AATCACGGTA CGTGGGCCGT AGCCGCAGTA GGCATGACTG GTTACGTACT TGGCAACGAT
GAGCTCGTTG AAATCTCGTT AATGGGTTTA GATAAAACCG GTAAAGCGGG TTTTATGAAG
CAGTTGGATA AACTGTTTTC GCCAGATGGC TATTACACAG AAGGCCCATA CTACCAACGC
TATGCACTTA TGCCATTTAT TTGGTTTGCC AAAGCGATTG AAACCAATGA GCCTGAGCGA
AAAATATTTG AATACCGCAA TAATATTTTG TTGAAGGCGG TGTATACCAC TATCGATCTT
AGTTATGCGG GTTACTTTTT CCCCATCAAT GATGCGCTTA AAGATAAAGG TATTGATACC
GTAGAGCTTG TACATGCGTT GGCAATTGTC TACTCAATTA CCGGTGACAA TACATTGTTA
GATATCGCGC AAGAACAAGG GCGCATTAGC CTAACTGGTG ACGGCCTAAA AGTGGCAAAG
GCTGTTGGCG AAGGTTTAAC CCAGCCATAT AACTATCGCT CCATTTTATT GGGTGATGGC
GCTGATGGTG ATCAAGGTGC TCTGTCTATT CACCGTTTGG GTGAAGGTCA TAACCATATG
GCGCTGGTGG CGAAGAATAC TAGCCAAGGT ATGGGGCATG GTCACTTCGA TAAGCTTAAT
TGGCTTTTAT ACGATAACGG CAACGAAATA GTTACCGATT ACGGTGCGGC GCGCTACCTA
AACGTTGAAG CTAAATACGG CGGTCATTAT TTAGCTGAAA ACAATACATG GGCTAAACAA
ACTATCGCGC ACAACACTTT GGTTGTAAAC GAGCAAAGCC ATTTTTATGG CGACGTTACA
ACAGCCGATT TGCATCACCC CGAAGTGCTT AGCTTTTATA GTGGCGAAGA CTATCAGTTA
AGTTCTGCGA AAGAGGCTAA TGCCTACGAT GGCGTTGAGT TTGTTCGCTC CATGCTGCTG
GTAAATGTGC CTTCGCTAGA GCACCCAATT GTTGTAGATG TGTTGAATGT TTCTGCCGAT
AAAGCCTCAA CATTTGATTT GCCATTGTAT TTTAACGGTC AAATTATCGA TTTTAGCTTT
AAGGTAAAAG ACAACAAAAA TGTGATGAAA ATGCTAGGCA AGCGCAATGG CTACCAACAC
CTGTGGTTGC GTAACACTGC ACCAGTAGGT GACGCCAGTG AGCGCGCTAC TTGGATACTT
GATGATCGCT TTTATTCTTA TGCGTTTGTT ACTTCTACTC CAAGTAAAAA GCAAAATGTA
TTGATTGCTG AGTTGGGAGC AAACGACCCT AACTACAATT TGCGTCAGCA GCAGGTATTA
ATTCGTCGAG TAGAAAAAGC GAAGCAGGCA TCGTTTGTTA GCGTGTTAGA GCCACACGGT
AAATACGATG GTTCGTTGGA GACGACTAGC GGTGCTTACT CAAATGTTAA ATCAGTTAAA
CACGTAAGCG AAAACGGTAA AGATGTGGTT GTAGTTGATT TGAAAGATGG CAGCAATGTT
GTTGTCGCTT TGTCCTACAA CGCTAATAGC GAGCAAGTAC ATAAAGTAAA CGCCGGTGAA
GAAGCGATAG AGTGGAAGGG CTTCTCTAGC GTGGTGGTTC GACGTAAATA A
|
|---|
| Protein sequence | MLSVNTIKNT LLAAVLVSVP ATAQVSGNGH PNLIVTEQDV ANIAASWESY DAYAEQLNAD
KTNLDAFMAE GVVVPMPKDA GGGYTHEQHK RNYKAIRNAG FLYQVTGDEK YLTFAKDLLL
AYAKMYPSLG EHPNRKEQSP GRLFWQSLNE AVWLVYSIQG YDAIIDGLAA EEKQEIESGV
FLPMAKFLSV ESPETFNKIH NHGTWAVAAV GMTGYVLGND ELVEISLMGL DKTGKAGFMK
QLDKLFSPDG YYTEGPYYQR YALMPFIWFA KAIETNEPER KIFEYRNNIL LKAVYTTIDL
SYAGYFFPIN DALKDKGIDT VELVHALAIV YSITGDNTLL DIAQEQGRIS LTGDGLKVAK
AVGEGLTQPY NYRSILLGDG ADGDQGALSI HRLGEGHNHM ALVAKNTSQG MGHGHFDKLN
WLLYDNGNEI VTDYGAARYL NVEAKYGGHY LAENNTWAKQ TIAHNTLVVN EQSHFYGDVT
TADLHHPEVL SFYSGEDYQL SSAKEANAYD GVEFVRSMLL VNVPSLEHPI VVDVLNVSAD
KASTFDLPLY FNGQIIDFSF KVKDNKNVMK MLGKRNGYQH LWLRNTAPVG DASERATWIL
DDRFYSYAFV TSTPSKKQNV LIAELGANDP NYNLRQQQVL IRRVEKAKQA SFVSVLEPHG
KYDGSLETTS GAYSNVKSVK HVSENGKDVV VVDLKDGSNV VVALSYNANS EQVHKVNAGE
EAIEWKGFSS VVVRRK
|
|---|
| |