| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3274 |
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| Symbol | |
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| ID | 3965766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 4180019 |
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| End bp | 4181596 |
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| Gene Length | 1578 bp |
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| Protein Length | 525 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637922371 |
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| Product | Poly(beta-D-mannuronate) lyase |
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| Protein accession | YP_528741 |
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| Protein GI | 90022914 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0000152835 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00641941 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAAAA TAGTAGCTAG TCTTTTAATA GGGTTATGCA GCTTGGCTGT GTGTGCCGAA
ACGCATATTT ACGATGGCAA AGGTAAAGAA ACCTGGACCA AAACGGACTT AAAGCCGGGC
GATGTGGTGA TTATCCCGAA TGGCACCTAC GCCGACTTAA AAATTAACGT GCAGGGCAAA
GGTGAGCAGG CCAAGCCGAT TGTACTTAAA GCAGAAACAC CTGGGGGCGT TGTGCTTACA
GGTGCATCGT GGCTGCGCTA CTGGGGCTAT TTTATTGTGG TAGATGGTTT CGATTTTAAC
GACGTAACCT ATTCCATGTA TAAAAATAAA GTGCGGGCAA TTATTGCCAA CCGCCGCGCG
GGTTCTAGCA GTGAGTCCTC TAAGGATATG TGCCAAGCGT GCGTGTTACA GCGCGTGCGT
ATAGATAACG AGAACGATAA AGCGATCGAT ACTGAATATA AATGGATTGA GCTATACGGT
TATAACAACG TGGTGAGGTA CAACTACTTC GGTGCTAAAA AATCGGGCAG CCGAGTTTTA
CAGGTTCAGT TAAAGCATGC TAATGCGCAA AAATTGCCCG TATCCCATGT TATTCAGTAC
AACTATTTTG CTTCGCGTAA CGCGGGCAAA GCTGTAGGTA ATGGTGGTGA AGCATTGTTA
GTGGGCGATT CAAATATGCA GCATGTTGAT GCTAAGGTTA CCGTGGCCAA CAACTTATTT
TACGATGCAT CCATACTTGG CGAGCCAGAG GTTATTTCGA ACAAATCCTC CTCTAATATT
TATCGCAGCA ATACTGTGCG CAATACAACC GCGAGCCTCA CGCTGCGCCA CGGCAACAGA
AACACTGTAG AGAATAACTG GTTTTTGCAG GACCAAACAG AAGGCTCTGG TGGTATACGT
GTCATTGGCG ACGATAATAT TATTCACAAC AATTACATTG CTGGCTCTGC CGGTGGTGGC
AAATCGGCCG CGTATCGGCC AGCACTTGGT ATTGCCGCGG GTTACTCCAA AAAAGATGAC
GATGCCAATA TCAACGGTTA CCAGTTAAGT GAGCGCAACG TGCTTTCGAA TAATAGCGTT
ATTCAATCTG CACAGCCTGT AATGCTTTCT ACTTGGTACG ATCGAGGTAA GCTAAGTATG
ACTCGCCCCC CTATGCAAAC CACGTTTATT AATAACTTGG TGTACCAACT AGATGTTGCA
CCATCTACTG CAGATTGGGT GCGGGGCTTA GCCATTAGTG TAGATTACAC GCCAGACTCT
GAATACGGTA ACAACTATGG CATTGATAAA GCGGAGTATG TACCGTCGTT TGCAAAAGTA
AAAGGCAATA TTACCGATGG CAAAGTGTCG CCACTGGTTA GCAAAGGCAC TAAAGCTGAA
TCGAAAAAAG AACTTAAAGG GTGCGATGCA TTTGGCACTG GCGATATCGT ATATTTACCC
CTTAAAAAAG CAGGCGCAGA CTTATCTAAA ATGGATGAAC CCTTGGTGTG GACCGACACA
GTAAAATCTG CTCGCTTAGG ACCAGATTGG TTGAATGCAA ATTGGGGCGG CGAGAAAAAA
GCCTATAAGG GATGTTAG
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| Protein sequence | MKKIVASLLI GLCSLAVCAE THIYDGKGKE TWTKTDLKPG DVVIIPNGTY ADLKINVQGK
GEQAKPIVLK AETPGGVVLT GASWLRYWGY FIVVDGFDFN DVTYSMYKNK VRAIIANRRA
GSSSESSKDM CQACVLQRVR IDNENDKAID TEYKWIELYG YNNVVRYNYF GAKKSGSRVL
QVQLKHANAQ KLPVSHVIQY NYFASRNAGK AVGNGGEALL VGDSNMQHVD AKVTVANNLF
YDASILGEPE VISNKSSSNI YRSNTVRNTT ASLTLRHGNR NTVENNWFLQ DQTEGSGGIR
VIGDDNIIHN NYIAGSAGGG KSAAYRPALG IAAGYSKKDD DANINGYQLS ERNVLSNNSV
IQSAQPVMLS TWYDRGKLSM TRPPMQTTFI NNLVYQLDVA PSTADWVRGL AISVDYTPDS
EYGNNYGIDK AEYVPSFAKV KGNITDGKVS PLVSKGTKAE SKKELKGCDA FGTGDIVYLP
LKKAGADLSK MDEPLVWTDT VKSARLGPDW LNANWGGEKK AYKGC
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