| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3258 |
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| Symbol | |
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| ID | 3965749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 4156606 |
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| End bp | 4157199 |
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| Gene Length | 594 bp |
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| Protein Length | 197 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637922354 |
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| Product | peptidyl-tRNA hydrolase |
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| Protein accession | YP_528725 |
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| Protein GI | 90022898 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0193] Peptidyl-tRNA hydrolase |
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| TIGRFAM ID | [TIGR00447] peptidyl-tRNA hydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00577247 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAACGC CAGACACCTG CATACAACTT ATTGTTGGCC TGGGTAACCC CGGCAACGAA
TACGAACATA CCCGACACAA CGCCGGGCAA GATTTCGTAG AAGAGCTCGC CCGCGACTTG
GGCCAGCCAC TTAGCCCCAC ACCCAAATTC TTCGGCCATT TTTCCCGCTT AAATATAAAC
GGCAAAGATG TACGACTACT TGTGCCCACC ACCTATATGA ACCGCAGCGG TCAAGCTGTG
GCAGCGGTGT GCCAGTTTTA TAAAATACCC CCCGAAGCCG TGCTGGTTGT ACACGACGAG
CTCGACCTGC CACCCGGCAA AGCGCGCCTA AAAATAGGCG GCGGCCACGG TGGCCACAAC
GGCCTGCGAG ACATAATAAG CAGCCTTGGC AACAACAAAG ACTTCGGACG CTTACGGTTA
GGCATAGGCC ACCCAGGCAA CGCCAAGCTA GTAAGTAATT ACGTACTAAA GAAAGCGCCT
AGCGAAGAAT TCAATGCAAT TGAAGACGCT ATCCGCGCCG CGCAGCCCCA CGTAGCCGAC
CTTGCGAAAG GCGACTGGGA AAAAGCTATG CGCGAACTCC ATTCCAAAAC CTAG
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| Protein sequence | MKTPDTCIQL IVGLGNPGNE YEHTRHNAGQ DFVEELARDL GQPLSPTPKF FGHFSRLNIN
GKDVRLLVPT TYMNRSGQAV AAVCQFYKIP PEAVLVVHDE LDLPPGKARL KIGGGHGGHN
GLRDIISSLG NNKDFGRLRL GIGHPGNAKL VSNYVLKKAP SEEFNAIEDA IRAAQPHVAD
LAKGDWEKAM RELHSKT
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