Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3257 |
Symbol | |
ID | 3965748 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 4155881 |
End bp | 4156513 |
Gene Length | 633 bp |
Protein Length | 210 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637922353 |
Product | 50S ribosomal protein L25/general stress protein Ctc |
Protein accession | YP_528724 |
Protein GI | 90022897 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1825] Ribosomal protein L25 (general stress protein Ctc) |
TIGRFAM ID | [TIGR00731] ribosomal protein L25, Ctc-form |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00633944 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCTAACG AAGACTTTAT ATTAAACGCC GAAGCGCGCG ATGTTTCAGG GAAAGGTGCG AGCCGCCGCC TGCGTCGTGA AGCTGGTTTA GTGCCTGCCA TCGTATATGG CGGTCGCAAA AACCCACAAA ACGTAACCAT CACATTACGT GAGCTTACCA AGCACTTAGA AAACGAAGCA TTTTACTCTC ACATCATCAC CTTAAACATT GGTGACAGCA GCGAGCAAGT AATCTTAAAA GACCTTCAGC GTCACCCAGC AACTAACTTT GCTATGCACG CTGACTTCTT GCGCGTTTCT AAAACCAAGA AGTTCAACAC CAAAGTACCT TTGCACTTTA TTAACGAAGC AACCTCTAAG GGCGTTAAAG AGCAAGGCGG TAAAGTACAG CACAGCATGA CCGAGCTAGA AATTGCTTGT TTACCAGCTG ACTTACCAGA GTTCATCGAA GTAGATTTAG CAAACGTAGA GTTGGGCGGC ATCGTTCACA TCTCTGATAT CGTTTTGCCA AAAGGCGTTG AATCTATCGC TCTACAACAA GGCGAAGACC ACGACCTACC TGTAGCGTCT ATCTTCAAGC CTAAAGGCGT AGCTGGCGAC GAAGACGAAG AGGCAGAAGG CGACGCAGAG TAA
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Protein sequence | MSNEDFILNA EARDVSGKGA SRRLRREAGL VPAIVYGGRK NPQNVTITLR ELTKHLENEA FYSHIITLNI GDSSEQVILK DLQRHPATNF AMHADFLRVS KTKKFNTKVP LHFINEATSK GVKEQGGKVQ HSMTELEIAC LPADLPEFIE VDLANVELGG IVHISDIVLP KGVESIALQQ GEDHDLPVAS IFKPKGVAGD EDEEAEGDAE
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